Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_M18
(908 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 4e-17
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 84 2e-16
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 70 3e-12
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 56 3e-08
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 37 0.026
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3) 29 5.2
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 28 9.1
SB_27940| Best HMM Match : IncA (HMM E-Value=0.41) 28 9.1
SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6) 28 9.1
SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 85.8 bits (203), Expect = 4e-17
Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Frame = +2
Query: 167 LCYYDSRSXVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 346
+CY+ + + R + LP D+DP L CTH++Y +A I P T K+ + N DR
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWN--DDRL-- 454
Query: 347 NYRAITSLKAKYPGLTVLLSVGGDADTEEP-EKYNLLLESQQARTAFIXSGVLLAEQYGF 523
Y+ I LK K P L LL+VGG P ++ ++ S+ RT FI S + L+++Y F
Sbjct: 455 -YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDF 513
Query: 524 DGIDXXWQFP 553
DG D W++P
Sbjct: 514 DGFDLDWEYP 523
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 83.8 bits (198), Expect = 2e-16
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Frame = +2
Query: 170 CYYDSRSXVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDN 349
CYY + S R P D+DP L CTH+L+ +A + T+KL EN H+
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77
Query: 350 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFIXSGVLLAEQYGFDG 529
Y+ I +LK P L ++VGG E+ ++ ++ +++ R FI S + +GFDG
Sbjct: 78 YQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDG 137
Query: 530 IDXXWQFPRVXPXXIRSTWG--SXWAWKLRKTFGXHAQSDXK 649
+D W++P + +S G + +LR+ F A++ K
Sbjct: 138 LDLDWEYPGMRGGSPKSDKGRFTLLCRELREAFEAEAKASGK 179
Score = 72.5 bits (170), Expect = 4e-13
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 2/163 (1%)
Frame = +2
Query: 167 LCYYDSRSXVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 346
+CYY + S R P D+DP L CTH+++ ++ + T+ + +N D
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-----DFD 461
Query: 347 NYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFIXSGVLLAEQYGFD 526
Y+ I +LK P L ++VGG E+ ++ ++ +++ R FI S + GFD
Sbjct: 462 LYKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFD 521
Query: 527 GIDXXWQFPRVXPXXIRSTWG--SXWAWKLRKTFGXHAQSDXK 649
G+D W++P + +S G + +LR F A+ K
Sbjct: 522 GLDLDWEYPGMRGGSPKSDKGRFTLLCQELRDAFEAEAKDSGK 564
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 69.7 bits (163), Expect = 3e-12
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Frame = +2
Query: 167 LCYYDSRSXVRESQARMLPLDLDPALSFCTHLLYGYAGI-QPDTYKLVSLNENLDIDRTH 343
+CY+ + S R+ +A+ P D+ PA CTHL+Y +A I Q + + N+ D+ +
Sbjct: 22 VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75
Query: 344 DNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFIXSGVLLAEQYGF 523
+ A LK K P L LL+VGG ++ ++++ R FI S + + +GF
Sbjct: 76 PRFNA---LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGF 132
Query: 524 DGIDXXWQFP 553
DG+D W++P
Sbjct: 133 DGLDLDWEYP 142
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 58.4 bits (135), Expect = 7e-09
Identities = 38/129 (29%), Positives = 63/129 (48%)
Frame = +2
Query: 167 LCYYDSRSXVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 346
+CYY + + R A+ P ++DP+L CTH++Y +A + D KL N D
Sbjct: 25 VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN---DAAM- 77
Query: 347 NYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFIXSGVLLAEQYGFD 526
Y+ + LK+ + LL+VGG P + ++ + R FI +L + FD
Sbjct: 78 -YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFD 133
Query: 527 GIDXXWQFP 553
G+D W++P
Sbjct: 134 GLDLDWEYP 142
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 56.4 bits (130), Expect = 3e-08
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +2
Query: 242 LSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDN--YRAITSLKAKYPGLTVLLSVGG 415
+ T LL G+A + + L + +D+ Y+ LK K PGL LL+VGG
Sbjct: 149 MQLLTLLLLGFASFAAASNYVHRCRHTLAMFEWNDDKLYKEFNDLKLKNPGLKTLLAVGG 208
Query: 416 DADTEEPEKYNLLLESQQARTAFIXSGVLLAEQYGFDGIDXXWQFP 553
++ ++ + +R FI S + + Q+ FDG D W++P
Sbjct: 209 WNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDGFDLDWEYP 254
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 36.7 bits (81), Expect = 0.026
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 350 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFIXSGVLLAEQYGFDG 529
Y+ + LK+ + LL+VGG P + ++ + R FI +L + FDG
Sbjct: 2 YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58
Query: 530 IDXXWQFP 553
+D W++P
Sbjct: 59 LDLDWEYP 66
>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 347 CRVFGLCPGSRLRTPAYRCQAGYRHSRTASGCRTTERDRGPTAAC 213
CR+FG + L YR Q Y+H+R C T E+ R C
Sbjct: 483 CRLFGAIFDNSLGKTRYRSQ--YKHTRRRHPCSTCEQYRSRNRNC 525
>SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)
Length = 506
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -3
Query: 528 PSKPYCSANSTPEXMKAVRACC--DSSRRLYFSGSSVSASPPTDN 400
P P C A S+ E + ++R D RR+ F G V PP N
Sbjct: 384 PDIPICVAASSSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 428
>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
Length = 1042
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 344 DNYRAITSLKAKYPGLT---VLLSVGGDADTEEPEKYNL 451
DNY + + YP T V+LS GDA T +KY L
Sbjct: 112 DNYASCKLIPLTYPYYTPPVVILSANGDASTLPSDKYAL 150
>SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 418
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -3
Query: 528 PSKPYCSANSTPEXMKAVRACC--DSSRRLYFSGSSVSASPPTDN 400
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
Length = 329
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -3
Query: 528 PSKPYCSANSTPEXMKAVRACC--DSSRRLYFSGSSVSASPPTDN 400
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -3
Query: 528 PSKPYCSANSTPEXMKAVRACC--DSSRRLYFSGSSVSASPPTDN 400
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWISDDRGRRVDFKGKPVRLCPPPAN 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,282,092
Number of Sequences: 59808
Number of extensions: 447814
Number of successful extensions: 878
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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