Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M18
         (908 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si...    52   7e-07
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    50   2e-06
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    47   2e-05
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si...    46   3e-05
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si...    46   5e-05
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si...    41   0.001
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si...    39   0.005
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si...    38   0.007
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si...    33   0.20 
At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein con...    30   2.4  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    29   4.3  
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P...    29   5.6  

>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 398

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
 Frame = +2

Query: 227 DLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAIT-SLKAKYPGLTVLL 403
           D+D +L   THL   +A ++ ++Y++     N         + A T +++ + P +  LL
Sbjct: 22  DIDSSLF--THLFCTFADLEAESYEITIATWN------QAPFHAFTETVQQRNPHVKTLL 73

Query: 404 SVGGDADTEEPEKYNLLLESQQARTAFIXSGVLLAEQYGFDGIDXXWQFPR 556
           S+GG     + + +  +  +  +R +FI S + +A  YGF G+D  W++PR
Sbjct: 74  SIGGG--NADKDAFASMASNPDSRASFIQSTITVARSYGFHGLDLDWEYPR 122


>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 29/101 (28%), Positives = 50/101 (49%)
 Frame = +2

Query: 254 THLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEE 433
           THL   +A + P T  +V    +   ++   N+  I  +K K P +  LLS+GG     +
Sbjct: 39  THLFCAFADLDPQTNSVVVSGAH---EQEFSNFTKI--VKKKNPHVQTLLSIGGR--NAD 91

Query: 434 PEKYNLLLESQQARTAFIXSGVLLAEQYGFDGIDXXWQFPR 556
              +  +  +  +R +FI S +  A  Y FDG+D  W++P+
Sbjct: 92  KSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYPK 132


>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 29/109 (26%), Positives = 52/109 (47%)
 Frame = +2

Query: 227 DLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLS 406
           D+D +L   THL   +A +   T ++   + N     T        +++ + P +  LLS
Sbjct: 43  DIDSSLF--THLFCAFADLNSQTNQVTVSSANQPKFSTFTQ-----TVQRRNPSVKTLLS 95

Query: 407 VGGDADTEEPEKYNLLLESQQARTAFIXSGVLLAEQYGFDGIDXXWQFP 553
           +GG     +   Y  +  +  +R +FI S + +A  YGF G+D  W++P
Sbjct: 96  IGGGI--ADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP 142


>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 366

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 29/105 (27%), Positives = 49/105 (46%)
 Frame = +2

Query: 245 SFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDAD 424
           S  THL   +A I   TY+++  + N     T        +++ + P +  LLS+GGD  
Sbjct: 45  SLFTHLFCAFADINTLTYQVIVSSRNKPKFSTFTQ-----TVRRRNPTVKTLLSIGGDFT 99

Query: 425 TEEPEKYNLLLESQQARTAFIXSGVLLAEQYGFDGIDXXWQFPRV 559
                 +  +  +  +R  FI S + LA   GF G+D  W++P +
Sbjct: 100 YNFA--FASMASNPTSRKLFISSSIKLARSCGFHGLDLNWKYPSI 142


>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 332

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 30/118 (25%), Positives = 55/118 (46%)
 Frame = +2

Query: 200 ESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAK 379
           E+Q  +   +  P+  F THL   +A +  +++K+     +  I  T        ++K +
Sbjct: 24  ETQDPITSAETIPSALF-THLFCAFADLDANSHKVFVSQAHEFIFSTFTE-----TVKIR 77

Query: 380 YPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFIXSGVLLAEQYGFDGIDXXWQFP 553
            P +  LLS+GG         +  +  + Q+R  FI S + +A   GF G+D  W++P
Sbjct: 78  NPQVKTLLSIGGK--NANNSAFASMASNHQSRKTFIDSWIFIARSNGFHGLDLAWEYP 133


>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 261

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 452 LLESQQARTAFIXSGVLLAEQYGFDGIDXXWQFPR 556
           +  S   R +FI S + +A  YGFDG+D  W++PR
Sbjct: 1   MASSSYGRKSFILSTISIARSYGFDGLDLDWEYPR 35


>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 365

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 31/125 (24%), Positives = 57/125 (45%)
 Frame = +2

Query: 179 DSRSXVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRA 358
           D +S   E  ++  P     +  F THL   +A +   T+++     N     ++     
Sbjct: 22  DGKSQSPECLSQGTPSSFIDSTLF-THLFCAFADVDSSTHEVTISAAN-----SYQFSSF 75

Query: 359 ITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFIXSGVLLAEQYGFDGIDX 538
             ++K K   +  LLS+GG  D ++    ++   S+  R AFI S + +A +  F G+D 
Sbjct: 76  TETVKEKNTDVQTLLSIGGK-DADKAVLASMASNSKN-RKAFIDSSIDIARKKDFYGLDL 133

Query: 539 XWQFP 553
            W++P
Sbjct: 134 AWEYP 138


>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 362

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
 Frame = +2

Query: 254 THLLYGYAGIQPDTYKL-VSLNENLDIDR-THDNYRAITSLKAKYPGLTVLLSVGGDADT 427
           THL   +A +   T+++ +S   +  +   TH       ++K K   +  LLS+GG  D 
Sbjct: 38  THLFCAFADVDSSTHEVTISAANSCQVSSFTH-------TVKDKNTDVQTLLSIGGK-DA 89

Query: 428 EEPEKYNLLLESQQARTAFIXSGVLLAEQYGFDGIDXXWQFP 553
           ++    ++   S+  R AFI S + +A +  F G+D  W++P
Sbjct: 90  DKAVLASMASNSKN-RKAFIDSSIDIARKKDFYGLDLAWEYP 130


>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 289

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 452 LLESQQARTAFIXSGVLLAEQYGFDGIDXXWQFP 553
           ++ ++ +R +FI S + +A   GF G+D  W++P
Sbjct: 79  IVSNRTSRESFISSSISIARSLGFYGLDLAWEYP 112


>At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase (GI:3820531) [Pinus
           contorta]; similar to beta-glucosidase GI:804655 from
           (Hordeum vulgare)
          Length = 520

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
 Frame = +2

Query: 269 GYAGIQPDTYKLVSLNENLDIDRTHDN----YRAITSLKAKYPGLTVLLSVGGDADTEEP 436
           GYA ++ D    V++ E  D++  H +    ++ +  LK +YP + + ++  G  D ++P
Sbjct: 368 GYA-LKLDRKGNVTIGELTDVNWQHIDPTGFHKMLNYLKDRYPNMPMFITENGFGDLQKP 426

Query: 437 EKYNLLLESQQARTAFIXSGVLLAEQ 514
           E  +  L +   R  ++ SG L A Q
Sbjct: 427 ETTDKELLNDTKRIQYM-SGYLEALQ 451


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 260 LLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITS 367
           LLYGY+G+    +KL      L+ +RT  ++ A+ S
Sbjct: 130 LLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLS 165


>At2g33210.1 68415.m04069 chaperonin, putative similar to
           SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
           precursor (HSP60-2) [Cucurbita maxima]; contains
           Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
          Length = 585

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 374 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFIXSGVL 502
           AK  G   +L +GG ++TE  EK + + ++  A  A +  G++
Sbjct: 401 AKLSGGVAVLKIGGASETEVSEKKDRVTDALNATKAAVEEGIV 443


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,750,274
Number of Sequences: 28952
Number of extensions: 308296
Number of successful extensions: 633
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)