Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M13
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.046
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.14 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.19 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.99 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.0  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +2

Query: 491 PGXXPXP---PXXGGPXFXPPPXXXGVGGXXXPPPP 589
           P   P P   P  GGP   PPP   GV G   PPPP
Sbjct: 746 PAPIPVPPPAPIMGGP--PPPPPPPGVAGAGPPPPP 779



 Score = 32.7 bits (71), Expect = 0.061
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = +2

Query: 491 PGXXPXPPXXGGPXFXPPPXXXGVGGXXXPPPPXKXGGG 607
           P   P P   G P   PPP   G G    PPPP     G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 19/54 (35%), Positives = 19/54 (35%)
 Frame = +2

Query: 509 PPXXGGPXFXPPPXXXGVGGXXXPPPPXKXGGGXXXPPXNXXXXPPPXXGXXGG 670
           P     P   PPP     G    PPPP   G G   PP      PPP     GG
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP------PPPPAVSAGG 789



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -1

Query: 668 PPXTPXXGGGXXXXFXGGXPPPPPXFXGGGXXGXXQPPP 552
           PP  P  GG          PPPPP   G G      PPP
Sbjct: 752 PPPAPIMGGPPP-------PPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 606 PPPXFXGGGGXXXPPTPXXXGGGXKXGPP 520
           PPP    GG    PP P   G G    PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
 Frame = +3

Query: 498 KXPPPPXXGXXLXXP-------PPXXXGLXGXXXPPPP--KXXGGGXXPPP 623
           K PPPP     +  P       PP    + G   PPPP      G   PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +2

Query: 485 GXPGXXPXPPXXGGPXFXPPPXXXGVGGXXXPPPPXKXGGG 607
           G P   P PP   G    PPP          PPPP    GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP----------PPPPAVSAGG 789


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 25/74 (33%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
 Frame = -3

Query: 645 GGXXXXFXGGXXXPPP---XFXGGGGXXXPPTPXXXGGGXKXGPPQ-XGGXGFXPGXPXX 478
           GG    F GG   PPP    F G GG           GG   GP    GG G   G P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 477 XXKKXGVXPENPGG 436
                G     PGG
Sbjct: 247 FGGGLGGFGGGPGG 260


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
 Frame = +3

Query: 492 RXKXPPPPXXGXXLXXPPPXXXGLXG---XXXPPPPKXXGGGXXPPPKTXXXXPP 647
           + + PPPP         PP   G         PPPP+    G  P P      PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362



 Score = 29.1 bits (62), Expect = 0.75
 Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
 Frame = +2

Query: 503 PXPPXXGGPXFXPPPXXXGVGGXXXPPPPX----KXGGGXXXPPXNXXXXPPP 649
           P PP         PP   G      PPPP        G    PP      PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 504 PPPPXXGXXLXXPPPXXXGLXGXXXPPPPKXXGGGXXPPP 623
           PPPP         P    G      PPP      G  PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -1

Query: 671 PPPXTPXXGGGXXXXFXGGXPPPPPXFXGGGXXGXXQPPP 552
           PPP      G       G   PPPP        G  QPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG-RQPPP 378


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +3

Query: 504 PPPPXXGXXLXXPPPXXXGLXGXXXPPPPKXXGGGXXPPPKTXXXXP 644
           PPP         PPP      G   PPPP     G   PP      P
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 255



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +3

Query: 504 PPPPXXGXXLXXPPPXXXGLXGXXXPPPPKXXGGGXXPPPKTXXXXP 644
           PPP         PPP      G   PPPP     G   PP      P
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 268



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +3

Query: 504 PPPPXXGXXLXXPPPXXXGLXGXXXPPPPKXXGGGXXPPPKTXXXXP 644
           PPP         PPP      G   PPPP     G   PP      P
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 281



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +3

Query: 504 PPPPXXGXXLXXPPPXXXGLXGXXXPPPPKXXGGGXXPPPKTXXXXP 644
           PPP         PPP      G   PPPP     G   PP      P
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 294



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +3

Query: 504 PPPPXXGXXLXXPPPXXXGLXGXXXPPPPKXXGGGXXPPPKTXXXXP 644
           PPP         PPP      G   PPPP     G   PP      P
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 307



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +3

Query: 504 PPPPXXGXXLXXPPPXXXGLXGXXXPPPPKXXGGGXXPPPKTXXXXP 644
           PPP         PPP      G   PPPP     G   PP      P
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 320



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +3

Query: 504 PPPPXXGXXLXXPPPXXXGLXGXXXPPPPKXXGGGXXPPPKTXXXXP 644
           PPP         PPP      G   PPPP     G   PP      P
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 504 PPPPXXGXXLXXPPPXXXGLXGXXXPPPPKXXGGGXXPPP 623
           PPP         PPP      G   PPPP     G   PP
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 339



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +3

Query: 540 PPPXXXGLXGXXXPPPPKXXGGGXXPPPKTXXXXP 644
           PPP      G   PPPP     G   PP      P
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEP 242



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
 Frame = +2

Query: 503 PXPPXXGGPX-FXPPPXXXGVGGXXXPPPPXK 595
           P PP    P    PPP      G   PPPP K
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFK 343


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 617 GXPPPPPXFXGGGXXGXXQPPPXGG 543
           G PPPPP   G        PPP  G
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = -1

Query: 620 GGXPPPPPXFXGGGXXGXXQPPPXGGGXXKXXPXXXGG 507
           G   PPPP   GG   G    P  G G  +      GG
Sbjct: 72  GNAAPPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,390
Number of Sequences: 5004
Number of extensions: 42112
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)