Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M12
         (892 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.077
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_41446| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)                   31   1.7  
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  28   8.8  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 35.1 bits (77), Expect = 0.077
 Identities = 27/104 (25%), Positives = 32/104 (30%)
 Frame = +1

Query: 565 GGXXPCNFSPKIXXPXPXXXPXEXXPXTPFPXVXLPXXLXPPXGHXXXXXXXXXXXXFXT 744
           GG  P NFSP    P P   P    P  P+P    P    PP               +  
Sbjct: 81  GGHPPTNFSPNPPYPPPPYPP--YPPPPPYPPPPNPPYPPPPNA----PYPPPPNPPYPP 134

Query: 745 XPXXTHXXXSXFPQHPPXXXLXLXPPXNSXXPXPXGPLXTFXPP 876
            P   +      P +PP       PP     P P  P   + PP
Sbjct: 135 PPNAPYPPSPNAP-YPPPPNPPYPPPLYPPPPNPPPPNAPYPPP 177



 Score = 31.9 bits (69), Expect = 0.72
 Identities = 25/112 (22%), Positives = 30/112 (26%), Gaps = 3/112 (2%)
 Frame = +1

Query: 550 PPXXIGGXXPCNFSPKIXXPXPXXXPXEXXPXTPFPXVX---LPXXLXPPXGHXXXXXXX 720
           PP       P    P    P P   P    P  P+P       P  L PP  +       
Sbjct: 114 PPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAP 173

Query: 721 XXXXXFXTXPXXTHXXXSXFPQHPPXXXLXLXPPXNSXXPXPXGPLXTFXPP 876
                +   P   +      P  PP       PP     P P  P   + PP
Sbjct: 174 YPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPP 225



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/109 (22%), Positives = 30/109 (27%)
 Frame = +1

Query: 550 PPXXIGGXXPCNFSPKIXXPXPXXXPXEXXPXTPFPXVXLPXXLXPPXGHXXXXXXXXXX 729
           PP       P   +P    P P   P    P  P P    P    PP             
Sbjct: 109 PPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPP 168

Query: 730 XXFXTXPXXTHXXXSXFPQHPPXXXLXLXPPXNSXXPXPXGPLXTFXPP 876
                 P   +      P +PP       PP N+  P P  P   + PP
Sbjct: 169 PPNAPYPPPPYPPPPN-PPYPPPPNPPYPPPPNAPNPPPPNP--PYPPP 214


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +3

Query: 741 DGPPXNXXXXLXFSPTPPPXXTPXXP-PXXFXPPXPXG 851
           D PP          PTPPP  TP  P P    PP P G
Sbjct: 94  DPPPPATPPPPTMPPTPPPPQTPAPPGPDTPAPPAPGG 131


>SB_41446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 175 HHNT*KRVRTWWIFRPNPTVTLDCIPARDRMECLNYVQQRXADL 306
           HHNT +  R W+I +    VTLD + + D +E L +++    DL
Sbjct: 159 HHNTKQSARKWYIDKLTGGVTLDLMDSIDILEIL-FLKDAIVDL 201


>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
          Length = 593

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 783 PTPPPXXTPXXPPXXFXPPXP 845
           P PPP   P  PP  F PP P
Sbjct: 473 PPPPPPPPPPPPPPPFPPPPP 493


>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 750 PXNXXXXLXFSPTPPPXXTPXXPPXXFXPPXP 845
           P N        PTPPP   P  PP     P P
Sbjct: 212 PVNPPEPDYLEPTPPPPAAPAPPPPPAAAPPP 243


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 780 SPTPPPXXTPXXPPXXFXPPXP 845
           SP PPP   P  PP    PP P
Sbjct: 377 SPPPPPPPPPPSPPPPPQPPPP 398



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 780 SPTPPPXXTPXXPPXXFXPPXP 845
           SP PPP   P  PP    PP P
Sbjct: 388 SPPPPPQPPPPPPPPPPPPPPP 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,120,501
Number of Sequences: 59808
Number of extensions: 370852
Number of successful extensions: 1076
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)