Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M12
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        34   0.002
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        34   0.002
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        34   0.002
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.93 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   1.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 232 VTLDCIPARDRMECLNYVQQRXADLVPXDP 321
           + + CI  RDR EC+  V ++ AD+V  DP
Sbjct: 58  IPVSCISGRDRYECIEKVGKKEADVVAVDP 87



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 126 ICACVNAAKTTYKICVPSQHLKACQDM 206
           + A  +++   + ICVP  + K C +M
Sbjct: 23  VIAAQDSSGRIFTICVPEIYSKECDEM 49



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +1

Query: 241 DCIPARDRMECLNYVQQRXADLVPXDPXRHVRGXPKY 351
           DC   + + +CL  +++  ADL        +R   +Y
Sbjct: 416 DCTLEKSQDDCLKAIKENNADLTVVSGGSVLRATKEY 452


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 232 VTLDCIPARDRMECLNYVQQRXADLVPXDP 321
           + + CI  RDR EC+  V ++ AD+V  DP
Sbjct: 58  IPVSCISGRDRYECIEKVGKKEADVVAVDP 87



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 126 ICACVNAAKTTYKICVPSQHLKACQDM 206
           + A  +++   + ICVP  + K C +M
Sbjct: 23  VIAAQDSSGRIFTICVPEIYSKECDEM 49



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +1

Query: 241 DCIPARDRMECLNYVQQRXADLVPXDPXRHVRGXPKY 351
           DC   + + +CL  +++  ADL        +R   +Y
Sbjct: 416 DCTLEKSQDDCLKAIKENNADLTVVSGGSVLRATKEY 452


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 232 VTLDCIPARDRMECLNYVQQRXADLVPXDP 321
           + + CI  RDR EC+  V ++ AD+V  DP
Sbjct: 58  IPVSCISGRDRYECIEKVGKKEADVVAVDP 87



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 126 ICACVNAAKTTYKICVPSQHLKACQDM 206
           + A  +++   + ICVP  + K C +M
Sbjct: 23  VIAAQDSSGRIFTICVPEIYSKECDEM 49



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +1

Query: 241 DCIPARDRMECLNYVQQRXADLVPXDPXRHVRGXPKY 351
           DC   + + +CL  +++  ADL        +R   +Y
Sbjct: 416 DCTLEKSQDDCLKAIKENNADLTVVSGGSVLRATKEY 452


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 135 MHKCRVIKMKYFRAIVKATDKL 70
           M K  ++K + FR+ +KA+DKL
Sbjct: 651 MEKLMMLKHREFRSSIKASDKL 672


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 52  VVDHLTELVGCLDNGSKIFHFD 117
           VV  LT L+GCL  G +I   D
Sbjct: 207 VVGGLTGLIGCLTLGRRILRLD 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,128
Number of Sequences: 438
Number of extensions: 4133
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)