Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M11
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    73   6e-14
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    73   6e-14
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.7  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   8.6  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 72.9 bits (171), Expect = 6e-14
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 90  KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 209
           KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK L
Sbjct: 138 KQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRL 177


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 72.9 bits (171), Expect = 6e-14
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 90  KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 209
           KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK L
Sbjct: 138 KQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL 177


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +3

Query: 711 SQXPGXGPXPPPXGGXVXXKXPPF*PRTGXXXSRGN 818
           S  PG  P PPP  G      PP  P  G    R N
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKN 38



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 836 PPPGXKTXFXPPXGXXPPGLPGF 904
           PPP     F PP    PP  PG+
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGY 32


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 134 WQAH*LLSEISIRWRSSWTCQEEEPPQGTGVAEPPMMKRKI 256
           W     +  +SI   + W  +E    QGT +  P  +KRKI
Sbjct: 103 WDKFLTVLPLSINTPAQWPEKEVYSLQGTSIFNPVCVKRKI 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,493
Number of Sequences: 5004
Number of extensions: 32134
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)