Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_M11
(924 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 73 4e-13
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 73 4e-13
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 73 4e-13
07_03_1357 - 25982861-25983068,25983354-25983361 58 7e-09
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 33 0.24
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.56
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 31 1.3
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 3.0
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 29 5.2
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 29 6.9
04_01_0414 - 5487688-5488004,5488179-5488382,5488895-5489210 28 9.1
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 72.5 bits (170), Expect = 4e-13
Identities = 36/53 (67%), Positives = 42/53 (79%)
Frame = +3
Query: 48 ARIFDPGKGIFVSRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 206
AR+ + I V R Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN
Sbjct: 127 ARVLIRQRHIRVGR-QIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKN 178
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 72.5 bits (170), Expect = 4e-13
Identities = 36/53 (67%), Positives = 42/53 (79%)
Frame = +3
Query: 48 ARIFDPGKGIFVSRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 206
AR+ + I V R Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN
Sbjct: 150 ARVLIRQRHIRVGR-QIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKN 201
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 72.5 bits (170), Expect = 4e-13
Identities = 36/53 (67%), Positives = 42/53 (79%)
Frame = +3
Query: 48 ARIFDPGKGIFVSRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 206
AR+ + I V R Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN
Sbjct: 343 ARVLIRQRHIRVGR-QIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKN 394
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 58.4 bits (135), Expect = 7e-09
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = +3
Query: 90 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 206
+Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 6 RQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 44
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 33.5 bits (73), Expect = 0.24
Identities = 19/69 (27%), Positives = 21/69 (30%)
Frame = +3
Query: 681 PXPYPXXGXVSQXPGXGPXPPPXGGXVXXKXPPF*PRTGXXXSRGNXSXLXXPPPXKKXX 860
P P P S P P PPP + PP P +R PPP
Sbjct: 572 PPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHS 631
Query: 861 FXPPXGXXP 887
PP P
Sbjct: 632 VLPPPPPPP 640
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.3 bits (70), Expect = 0.56
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +3
Query: 681 PXPYPXXGXVSQXPGXGPXPPPXGGXVXXKXPPF*PRTGXXXSRGNXSXLXXPPPXKKXX 860
P P P P GP PPP PP P G PPP K
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGA 386
Query: 861 FXPP 872
PP
Sbjct: 387 SRPP 390
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/87 (25%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Frame = +3
Query: 663 FREXXXPXPYPXXGXVSQXPGXGPXPPPXGGXVXXKXPPF*PRTGXXXSRGNXSXLXXPP 842
F P P P P GP P P K P P+ + PP
Sbjct: 153 FHHGPKPGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPP 212
Query: 843 -PXKKXXFXPPXGXXPLVYRXXPXXPG 920
P K PP P+ + P PG
Sbjct: 213 KPGPKPKPGPPQPWWPIPFPKPPCPPG 239
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 3.0
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = +3
Query: 681 PXPYPXXGXVSQXPGXGPXPPPXGGXV--XXKXPPF*PRTGXXXSRGNXSXLXXPPPXKK 854
P P P + PG GP PPP G PP G +RG PPP KK
Sbjct: 351 PPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARG-------PPPFKK 403
Score = 28.7 bits (61), Expect = 6.9
Identities = 19/69 (27%), Positives = 21/69 (30%)
Frame = +3
Query: 681 PXPYPXXGXVSQXPGXGPXPPPXGGXVXXKXPPF*PRTGXXXSRGNXSXLXXPPPXKKXX 860
P P+P G G PPP PP P + G S PPP
Sbjct: 303 PPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPS---AAGAGSGPPPPPPPAAPA 359
Query: 861 FXPPXGXXP 887
P G P
Sbjct: 360 APRPPGPGP 368
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 250 PLHHWRLRHPCPLRRFFLLTRPGRPPPNGDFR 155
PLHH + P PLR L P P + +R
Sbjct: 655 PLHHQKYHLPSPLRSLLALEDPRSPTASASYR 686
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 247 LHHWRLRHPCPLRRFFLLTRPGRPPP 170
+H++R P P+ R +RP RPPP
Sbjct: 49 VHYFRAASPIPIFRAAASSRPPRPPP 74
>04_01_0414 - 5487688-5488004,5488179-5488382,5488895-5489210
Length = 278
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 107 PIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEEPPQGTGVAEP-PMMK 247
P+ YC+ W +H S+ + ++ +++EPP G + P P++K
Sbjct: 209 PVSYCSTKKWSSHYYEIGFSMTGKINFYKRKDEPPATKGQSGPHPLVK 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,025,922
Number of Sequences: 37544
Number of extensions: 364585
Number of successful extensions: 862
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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