Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M11
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...    76   3e-14
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    30   2.0  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    29   6.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    26   8.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    26   8.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    26   8.6  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 33/41 (80%), Positives = 39/41 (95%)
 Frame = +3

Query: 87  RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 209
           R+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ L
Sbjct: 137 RRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTL 177


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/69 (30%), Positives = 26/69 (37%)
 Frame = +3

Query: 681  PXPYPXXGXVSQXPGXGPXPPPXGGXVXXKXPPF*PRTGXXXSRGNXSXLXXPPPXKKXX 860
            P  Y      ++ P  G  PPP GG    +  P  PR G    +G    +  PPP     
Sbjct: 1541 PSQYYHDSPQNRGPPMGGLPPPHGGMNGWRGGPPPPR-GGSHCQGPPPLMGGPPP---RL 1596

Query: 861  FXPPXGXXP 887
              PP G  P
Sbjct: 1597 GMPPPGPPP 1605


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 217 PLRRFFLLTRPGRPPPNGDFREKSMCLPESRRT 119
           P +  F   + G+ P N DF +K +C P  R T
Sbjct: 476 PQKLCFFFRKKGQKPENIDFSKKKLCAPLVRAT 508


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 25.8 bits (54), Expect(2) = 8.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 700 PVGFPXSRGXGPXPPXPGG 756
           P G P   G  P PP PGG
Sbjct: 732 PGGLPPITGGPPPPPPPGG 750



 Score = 20.6 bits (41), Expect(2) = 8.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 730 GPXPPXPGGXF 762
           GP PP P G F
Sbjct: 783 GPPPPPPPGMF 793


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 25.8 bits (54), Expect(2) = 8.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 700 PVGFPXSRGXGPXPPXPGG 756
           P G P   G  P PP PGG
Sbjct: 732 PGGLPPITGGPPPPPPPGG 750



 Score = 20.6 bits (41), Expect(2) = 8.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 730 GPXPPXPGGXF 762
           GP PP P G F
Sbjct: 783 GPPPPPPPGMF 793


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 25.8 bits (54), Expect(2) = 8.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 700 PVGFPXSRGXGPXPPXPGG 756
           P G P   G  P PP PGG
Sbjct: 315 PGGLPPITGGPPPPPPPGG 333



 Score = 20.6 bits (41), Expect(2) = 8.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 730 GPXPPXPGGXF 762
           GP PP P G F
Sbjct: 366 GPPPPPPPGMF 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,839,741
Number of Sequences: 27780
Number of extensions: 268186
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)