Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M11
         (924 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...    75   5e-14
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...    73   3e-13
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    31   0.82 
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   1.9  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    27   2.8  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   3.3  
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ...    28   7.6  
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    28   7.6  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    28   7.6  

>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 33/39 (84%), Positives = 37/39 (94%)
 Frame = +3

Query: 90  KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 206
           KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N
Sbjct: 140 KQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 35/53 (66%), Positives = 43/53 (81%)
 Frame = +3

Query: 48  ARIFDPGKGIFVSRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 206
           AR+    + I V R Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N
Sbjct: 127 ARVLIRQRHIRVGR-QLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRN 178


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 23/76 (30%), Positives = 23/76 (30%)
 Frame = +3

Query: 681 PXPYPXXGXVSQXPGXGPXPPPXGGXVXXKXPPF*PRTGXXXSRGNXSXLXXPPPXKKXX 860
           P P P    V   P   P PPP         PP  P      S    S    PPP     
Sbjct: 439 PPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPP 498

Query: 861 FXPPXGXXPLVYRXXP 908
             PP    P VY   P
Sbjct: 499 PPPPPPPPPPVYSPPP 514


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -2

Query: 179 TSTEWRFQREVNVLARVQAHN 117
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 26.6 bits (56), Expect(2) = 2.8
 Identities = 15/51 (29%), Positives = 16/51 (31%)
 Frame = +3

Query: 720 PGXGPXPPPXGGXVXXKXPPF*PRTGXXXSRGNXSXLXXPPPXKKXXFXPP 872
           P   P PPP         PP  P      +R        PPP  K    PP
Sbjct: 680 PPPPPPPPPKANISNAPKPPAPPPLPPSSTRLGAPPPPPPPPLSKTPAPPP 730



 Score = 21.4 bits (43), Expect(2) = 2.8
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +3

Query: 657 SPFREXXXPXPYPXXGXVSQXPGXGPXPPP 746
           SP      P P P  G         P PPP
Sbjct: 614 SPSAPPPPPPPPPSFGSTGNKRQAQPPPPP 643


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 720 PGXGPXPPPXGGXVXXKXPP 779
           PG GP PPP GG      PP
Sbjct: 686 PGGGPPPPPGGGPPPPPPPP 705



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 681 PXPYPXXGXVSQXPGXGPXPPP 746
           P P P  G     PG GP PPP
Sbjct: 681 PPPPPPGGGPPPPPGGGPPPPP 702


>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
           unknown protein (pir||T00468); contains Pfam PF00684 :
           DnaJ central domain (4 repeats)
          Length = 315

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 181 RPPPNGDFREKSMCLPESRRTIND 110
           RPPP+GD    + C+ E   T+ D
Sbjct: 58  RPPPSGDTVPNNFCIIEGSETVQD 81


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +3

Query: 645 LSAFSPFREXXXPXPYPXXGXVSQXPGXGPXPPPXGGXVXXKXP 776
           L A  PF+    P P P  G +S  P   P P   GG +    P
Sbjct: 233 LGAHGPFQPTPSPVPTPLAGWMSS-PSSVPHPAVSGGPIALGAP 275


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +3

Query: 645 LSAFSPFREXXXPXPYPXXGXVSQXPGXGPXPPPXGGXVXXKXP 776
           L A  PF+    P P P  G +S  P   P P   GG +    P
Sbjct: 233 LGAHGPFQPTPSPVPTPLAGWMSS-PSSVPHPAVSGGPIALGAP 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,153,538
Number of Sequences: 28952
Number of extensions: 242528
Number of successful extensions: 506
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)