Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M10
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    29   0.85 
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    29   0.85 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   2.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.6  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    27   3.4  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   4.5  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   4.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   7.9  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    26   7.9  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   7.9  

>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 659 PWKRHCHNSPSRTGTFLSRSTERSHHSPRVX*GSRYSITGN 781
           PW+    ++  R G  LSR  + S    R+   SRY + GN
Sbjct: 474 PWRAAPSSTLYRPGATLSRQVDASAELERITSESRYDVLGN 514


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = +1

Query: 400 HWDSLNSPLIQDEG---DGKTLKLRFDVSQYTPEEI-----VVKTVDNKLLVHAKHEEKS 555
           +++S   P+  DEG   D +  + RF +     + I     ++  V + +  +  H ++S
Sbjct: 305 NFNSYIKPVAGDEGRVEDEEFEENRFSIEDIEIDSIPAVRRLLGDVMSDIPYYMSHHKES 364

Query: 556 DTKSVYREYNREFLLXKGTNPEXIKS 633
             KSV RE NR + L K  NP  +++
Sbjct: 365 IIKSVIREANRVYHLWKDCNPYFLEN 390


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 202 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 291
           G F+ +D+E    IRE  +AE++KMEE+  K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +2

Query: 293 SDQNS*TEKATISSRAQLARRHLHSIVTADSLP-SPVTGIA*TRRSFKTRVTARLSSFAL 469
           S  NS T  AT +S   L+  +  +  +A S P S V     T  S  T +T+ ++S   
Sbjct: 426 SSANSTT--ATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSAS-STPLTS-VNSTTA 481

Query: 470 MSASILPKRSLLRLSTTNYWSTPNTRRNLIRNLCTENTTGSF 595
            SAS  P  S+   S T+  STP T  N   +    +T  S+
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 551 NLIRNLCTENTTGSFCXPREQILRXLSLRCPGTVCLPWK--RHCHNSPSRTGTFLSRS 718
           +L+   C E     +     +I R L  +C G   LP +  +H H++P R+    S+S
Sbjct: 391 DLLLKFCKETIVPYYSSKFPRITRNLLEKCNGLDLLPERSHKHRHSAPPRSKLISSKS 448


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 526 LVHAKHEEKSDTKSVYREYNREFLLXKGTNPEXIKSSLSRDGVLTVEA-PLPQL 684
           L H  HE   D +S+YR   R  L  +    E + S  S + +LTV + P P L
Sbjct: 49  LAHKVHE---DVESIYRRLERLQLCKRNEEEEMLNSDAS-EAMLTVSSVPSPTL 98


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +1

Query: 469 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLXKGTNPEXIKSSLSRD 648
           D S  T EE+V +  D K L       K+D +S + E ++ ++  +  +P  +  SLS D
Sbjct: 109 DHSSDTEEEVVSE--DQKQL------NKTDDESTFIESHQIYIQGETKSPSSVSQSLSGD 160

Query: 649 GVLTVEAPLPQLAITDRNIPIQK 717
             L       +    + N PI+K
Sbjct: 161 PSLKPAEVFDRKQSAEINSPIEK 183


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 472  VSQYTPEEIVVKTVDNKLLVHAKHEEKS-DTKSVYREYNREFLLXKGTNPEXIKSSL 639
            V   TP + V    DNK LV  K  EK  + +S   E  +E    K T PE  + +L
Sbjct: 1347 VPDSTPSDAVASETDNKNLVENKAVEKRVEARSSANERKQEERRRK-TTPEGNRRAL 1402


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 578 NTTGSFCXPREQILRXLSLRCPGTVCLPWKRHCHNSPS 691
           NT+ +       +L  LS  CPG +C   K H +  P+
Sbjct: 198 NTSSNSGINENAVLPILSSSCPGWICYVEKTHSNLIPN 235


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 653 CLPWKRHCHNSPSRTGTFLSRSTERSHH 736
           CL W RH  +S SR+G         ++H
Sbjct: 268 CLSWNRHVLSSGSRSGAIHHHDVRIANH 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,449
Number of Sequences: 5004
Number of extensions: 60822
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)