Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_M10
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1498 + 26995209-26995752,26995945-26996513 33 0.29
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 31 1.2
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 31 1.6
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 30 2.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 4.8
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 29 6.3
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 28 8.3
01_06_1616 + 38670457-38670885,38670989-38671365,38672593-386726... 28 8.3
>07_03_1498 + 26995209-26995752,26995945-26996513
Length = 370
Score = 33.1 bits (72), Expect = 0.29
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +1
Query: 379 RQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSD 558
++L P HW + P + + G G+ RF + TP E D+ + VH+ + SD
Sbjct: 245 KELEAPQHWSEMRCPQLANLGSGRFCIARFFHTWTTPMEPNSFGYDS-IKVHSFSDFDSD 303
Query: 559 TKSVYREYNREFLLXKGTN 615
+ S+ E F + GT+
Sbjct: 304 SDSIEFE-EHSFTVLTGTD 321
>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +3
Query: 180 EKYPHQA---WRFFGYRYRILKHQRALRCRNEEDGRRNEQIQIRTHEQRKQQFLQE 338
EKYP A RF G+R R+L + L E+G I +E+RK +FL+E
Sbjct: 1213 EKYPVMAELIHRFQGFRERLLADPKFLHRLAIEEGISITTTLIAQYEKRKGRFLEE 1268
>03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 227 SVSITEKSPSLMGIFLLRPLSAIFHVICRVEI-VETKQTLKRSRVNTFHWNNTH 69
S+ I+ S ++ ++L+P A IC + V++KQ+LK TF W +TH
Sbjct: 884 SLLISVGSKQVLTTWVLQPKVAENRHICSSGLDVDSKQSLKGDSAMTFQWLSTH 937
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 442 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEK 552
D K +++RFD+ + EE+ V D+ L++ +H+++
Sbjct: 140 DDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKE 176
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 485 LPKRSLLRLSTTNYWSTPNTRRNLIRNLCTE 577
L ++S L LST++ +S + RRNL+R+ T+
Sbjct: 715 LKRKSFLSLSTSSIFSPLSPRRNLLRSTSTD 745
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 228 ILKHQRALRCRNEEDGRRNEQIQIRTH 308
+ K +R + C+NE GRRN R H
Sbjct: 629 VAKRRRLVSCKNERTGRRNTAANKRQH 655
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 28.3 bits (60), Expect = 8.3
Identities = 9/31 (29%), Positives = 24/31 (77%)
Frame = +1
Query: 214 VIDTEFSSIRERFDAEMRKMEEEMSKFRSEL 306
V DTE ++ +E+F+A+++K +++ ++R ++
Sbjct: 18 VYDTENANQKEKFEADLKKEIKKLQRYRDQI 48
>01_06_1616 +
38670457-38670885,38670989-38671365,38672593-38672640,
38673200-38673242,38673673-38673786,38674049-38674348
Length = 436
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 581 TTGSFCXPREQILRXLSLRCPGTVCLPWKRH 673
T G R+ ++R RC G VCLP H
Sbjct: 290 TKGKMAGKRKPMIRYRKTRCGGLVCLPCFAH 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,519,699
Number of Sequences: 37544
Number of extensions: 379509
Number of successful extensions: 1170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -