Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M09
         (839 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           29   0.035
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   1.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.2  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 0.035
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = -3

Query: 429 WNKLTLPATPSCSPKPGMRVPVRLSPCPFT--LSRASPAEAALSLWRSLKSADPMALSTF 256
           W    LP+  + SP+P   +PV   P P    L +   +    +   ++ ++ PM ++T 
Sbjct: 67  WQVTPLPSDGTTSPEPDPEIPVAPEPAPLASPLVQEPGSSTTSATSGAVMASPPMPITTD 126

Query: 255 LSLPVRGTFRAAPEVP 208
               + G  R+  + P
Sbjct: 127 NVAAISGVLRSLLDRP 142


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 428 HNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGG 526
           H+   D+S+      N+PSA  N  NFN    G
Sbjct: 115 HDEIPDISSTRGNNNNTPSATNNNTNFNNNSNG 147


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 428 HNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGG 526
           H+   D+S+      N+PSA  N  NFN    G
Sbjct: 63  HDEIPDISSTRGNNNNTPSATNNNTNFNNNSNG 95


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 428 HNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGG 526
           H+   D+S+      N+PSA  N  NFN    G
Sbjct: 246 HDEIPDISSTRGNNNNTPSATNNNTNFNNNSNG 278


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 318 EAALSLWRSLKSADPMALSTF 256
           E  L+ W+  KSA+ +A+  F
Sbjct: 372 EVNLTCWQDTKSANKIAMKLF 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,524
Number of Sequences: 336
Number of extensions: 3086
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)