Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M09
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   2.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.4  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.8  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   7.6  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 6/42 (14%)
 Frame = -1

Query: 761  IILFKKXFREGG-----IPTLGLPRRSVKRRIEL-LEAGVEV 654
            ++++++  R GG     IP + L ++ V+RRI+L ++ G+EV
Sbjct: 1781 VVIYERADRPGGLLQYGIPNMKLDKKVVERRIQLMIDEGIEV 1822


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -3

Query: 405 TPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFR 226
           TPS +    +  P  +S     L  ++  E ++S   SL S+DP+  STF SL    T  
Sbjct: 129 TPSSTESSSLLDPSSVSSA--ILPSSTSVEVSISS-SSLSSSDPLTSSTFSSLS-SSTSS 184

Query: 225 AAPEVPS 205
           + P V S
Sbjct: 185 SQPSVSS 191


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 402 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRS 292
           PS +  PG  VP  +S  P   S  S + A+LSL  S
Sbjct: 310 PSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 621 AYRRPSSHSRLMTSECAALNDAPTFCLNM*STPP--PSVLKL 502
           A R+PSS  +        L  AP+  +++ STPP  PSVL +
Sbjct: 214 ATRKPSSSPQTTQDSSPILTMAPSTPVSVGSTPPSTPSVLPI 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,743
Number of Sequences: 5004
Number of extensions: 51375
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)