Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M07
         (843 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...    50   1e-05
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...    50   1e-05
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...    50   1e-05
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...    50   1e-05
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...    47   1e-04
AY507107-1|AAS87021.1| 1043|Homo sapiens NMDA receptor subunit 3...    30   9.1  

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 30/84 (35%), Positives = 36/84 (42%)
 Frame = +2

Query: 290 NCNXCPXXNLYXRXXLFXEXTMLKVXLXSXLXRXPLXXIVXXGYYKXLGXXNXPXHPVXX 469
           N + CP  NL     L  E T +     +     P+  +V  GYYK LG    P  PV  
Sbjct: 66  NQSFCPTVNLDKLWTLVSEQTRVNAA-KNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 124

Query: 470 XXXXXSXSAEXXMXDVGGACVLSA 541
                S  AE  +  VGGACVL A
Sbjct: 125 KAKFFSRRAEEKIKSVGGACVLVA 148


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 30/84 (35%), Positives = 36/84 (42%)
 Frame = +2

Query: 290 NCNXCPXXNLYXRXXLFXEXTMLKVXLXSXLXRXPLXXIVXXGYYKXLGXXNXPXHPVXX 469
           N + CP  NL     L  E T +     +     P+  +V  GYYK LG    P  PV  
Sbjct: 65  NQSFCPTVNLDKLWTLVSEQTRVNAA-KNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 123

Query: 470 XXXXXSXSAEXXMXDVGGACVLSA 541
                S  AE  +  VGGACVL A
Sbjct: 124 KAKFFSRRAEEKIKSVGGACVLVA 147


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 30/84 (35%), Positives = 36/84 (42%)
 Frame = +2

Query: 290 NCNXCPXXNLYXRXXLFXEXTMLKVXLXSXLXRXPLXXIVXXGYYKXLGXXNXPXHPVXX 469
           N + CP  NL     L  E T +     +     P+  +V  GYYK LG    P  PV  
Sbjct: 66  NQSFCPTVNLDKLWTLVSEQTRVNAA-KNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 124

Query: 470 XXXXXSXSAEXXMXDVGGACVLSA 541
                S  AE  +  VGGACVL A
Sbjct: 125 KAKFFSRRAEEKIKSVGGACVLVA 148


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 30/84 (35%), Positives = 36/84 (42%)
 Frame = +2

Query: 290 NCNXCPXXNLYXRXXLFXEXTMLKVXLXSXLXRXPLXXIVXXGYYKXLGXXNXPXHPVXX 469
           N + CP  NL     L  E T +     +     P+  +V  GYYK LG    P  PV  
Sbjct: 66  NQSFCPTVNLDKLWTLVSEQTRVNAA-KNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 124

Query: 470 XXXXXSXSAEXXMXDVGGACVLSA 541
                S  AE  +  VGGACVL A
Sbjct: 125 KAKFFSRRAEEKIKSVGGACVLVA 148


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score = 46.8 bits (106), Expect = 1e-04
 Identities = 29/84 (34%), Positives = 35/84 (41%)
 Frame = +2

Query: 290 NCNXCPXXNLYXRXXLFXEXTMLKVXLXSXLXRXPLXXIVXXGYYKXLGXXNXPXHPVXX 469
           N + CP  NL     L  E T +     +     P+  +V  GYYK LG       PV  
Sbjct: 66  NQSFCPTVNLDKLWTLVSEQTRVNAA-KNKTGAAPIIDVVRSGYYKVLGKGKLAKQPVIV 124

Query: 470 XXXXXSXSAEXXMXDVGGACVLSA 541
                S  AE  +  VGGACVL A
Sbjct: 125 KAKLFSRRAEEKIKSVGGACVLVA 148


>AY507107-1|AAS87021.1| 1043|Homo sapiens NMDA receptor subunit 3B
           protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 541 VXNKILVSCP-ARRRKILWLTPVLSHWVCAVPFPP 642
           V   +L+ C  AR R++L   P   HW+   P PP
Sbjct: 232 VPTAVLLGCDIARARRVLEAVPPGPHWLLGTPLPP 266


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,658,993
Number of Sequences: 237096
Number of extensions: 969461
Number of successful extensions: 2544
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2508
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)