Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M07
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    35   0.063
AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    35   0.063
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   4.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   4.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   4.1  

>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +2

Query: 386 RXPLXXIVXXGYYKXLGXXNXPXHPVXXXXXXXSXSAEXXMXDVGGACVLSA 541
           + P+      GY+K LG    P  P+       S  AE  +   GGACVL A
Sbjct: 37  KSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +2

Query: 386 RXPLXXIVXXGYYKXLGXXNXPXHPVXXXXXXXSXSAEXXMXDVGGACVLSA 541
           + P+      GY+K LG    P  P+       S  AE  +   GGACVL A
Sbjct: 94  KSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/66 (28%), Positives = 21/66 (31%)
 Frame = +1

Query: 631 PFPPXGXXPPXDXGXXAPXXIXXTXCTXAIPPXPXXDXPXPVXNLSQXXAXCXPPPXXXA 810
           P PP G  PP   G   P     +      PP P      P  +L    A   PPP    
Sbjct: 273 PPPPTGSPPPPPAGGSPPPPRAGSP-----PPPPPPRGSPPTGSLPPPQAGGSPPPAGTG 327

Query: 811 XXXPXP 828
              P P
Sbjct: 328 SPPPPP 333


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/66 (28%), Positives = 21/66 (31%)
 Frame = +1

Query: 631 PFPPXGXXPPXDXGXXAPXXIXXTXCTXAIPPXPXXDXPXPVXNLSQXXAXCXPPPXXXA 810
           P PP G  PP   G   P     +      PP P      P  +L    A   PPP    
Sbjct: 294 PPPPTGSPPPPPAGGSPPPPRAGSP-----PPPPPPRGSPPTGSLPPPQAGGSPPPAGTG 348

Query: 811 XXXPXP 828
              P P
Sbjct: 349 SPPPPP 354


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/66 (28%), Positives = 21/66 (31%)
 Frame = +1

Query: 631 PFPPXGXXPPXDXGXXAPXXIXXTXCTXAIPPXPXXDXPXPVXNLSQXXAXCXPPPXXXA 810
           P PP G  PP   G   P     +      PP P      P  +L    A   PPP    
Sbjct: 279 PPPPTGSPPPPPAGGSPPPPRAGSP-----PPPPPPRGSPPTGSLPPPQAGGSPPPAGTG 333

Query: 811 XXXPXP 828
              P P
Sbjct: 334 SPPPPP 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,640,707
Number of Sequences: 27780
Number of extensions: 135938
Number of successful extensions: 259
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)