Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M07
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   2.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.2  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 636 EWDXTHPVAXDGXKPK 589
           EW+  HP   DG +P+
Sbjct: 118 EWNAAHPEEDDGGQPR 133


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 521 GACVLSAXLIRSXYLVLPADGKYFGLXPSXATGC 622
           G CV +A +I     +   DGK++   PS    C
Sbjct: 218 GTCVANAVVIEQPTFLCKGDGKWY--LPSGGCHC 249


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 587 YFGLXPSXATGCVXSHSP 640
           +FGL  + A GC   H P
Sbjct: 319 FFGLVNNSAIGCWNEHQP 336


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 587 YFGLXPSXATGCVXSHSP 640
           +FGL  + A GC   H P
Sbjct: 319 FFGLMNNSAIGCWNEHQP 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,052
Number of Sequences: 438
Number of extensions: 2185
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)