Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M06
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105           31   1.5  
12_02_0674 - 21745321-21746223,21746229-21747608                       29   4.7  
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    29   6.2  
09_02_0060 + 3729613-3729863,3730377-3730392                           28   8.2  

>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
          Length = 430

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
 Frame = +2

Query: 647 PFAPKNP*PTSLHTEEXTTEGXSPFPPHFMXNHXLPXYXPAXG---PPXPXL 793
           P +P  P P             +P+PP    N  LP Y P  G   PP P L
Sbjct: 37  PSSPPPPPPPESSPSHYVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSL 88


>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
 Frame = +3

Query: 507 SSSTSNCXLVTTWERLTNGLGKIPEFSWYSPLRTG---LPSRPFTSXL---LSHLPQRTH 668
           S+ TS      +   L+   GKIP     +PL T    +PS P TS L    S +P    
Sbjct: 502 STPTSQIPSTASTRELSTATGKIPSTPRTNPLSTATSKIPSTPRTSLLSSSTSKIPSTPS 561

Query: 669 DLRVCTPKXELXKATPLSP 725
              + T   ++   T  SP
Sbjct: 562 TCELSTATGKIPSTTCTSP 580


>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
            3363820-3364098,3364189-3364386,3364475-3365110,
            3365209-3365463,3365579-3365685,3365770-3369566,
            3369677-3370166,3370918-3371308,3371481-3371573,
            3371687-3371810,3372544-3372791
          Length = 2380

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 582  FSWYSPLRT-GLPSRPFTSXLLSHLP 656
            F+W++   T   P+RPFTS L  H+P
Sbjct: 2349 FTWFACATTLQQPTRPFTSPLYKHMP 2374


>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 73  CFYKTACYARVYMNQXNVLIRLLHSYYPALRHRQLRSTCSIRSLSSIFCQ 222
           C   +A + R+ +     L  L+H+ +P  R+R  R+TC  R++ S+ C+
Sbjct: 13  CIAASAVHCRLPLAVVGPL--LVHAKWPPSRYRSYRATC-CRAVPSLLCR 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,661,099
Number of Sequences: 37544
Number of extensions: 356364
Number of successful extensions: 769
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)