Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M06
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41040.2 68418.m04989 transferase family protein similar to h...    29   3.9  
At5g41040.1 68418.m04988 transferase family protein similar to h...    29   3.9  
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR...    29   3.9  
At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containi...    28   6.9  
At4g13390.1 68417.m02092 proline-rich extensin-like family prote...    28   6.9  

>At5g41040.2 68418.m04989 transferase family protein similar to
           hypersensitivity-related gene product HSR201 - Nicotiana
           tabacum, EMBL:X95343; contains Pfam transferase family
           domain PF00248
          Length = 441

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 513 STSNCXLVTTWERLTNGLGKIPEFSWYSPLRTG---LPSRPFTSXLLSHLPQR 662
           S S+  L+TTW RL  G     +F W  P+ +G   LP +  T   LSH  QR
Sbjct: 369 SLSSTLLITTWSRL--GF-HTTDFGWGEPILSGPVALPEKEVT-LFLSHGEQR 417


>At5g41040.1 68418.m04988 transferase family protein similar to
           hypersensitivity-related gene product HSR201 - Nicotiana
           tabacum, EMBL:X95343; contains Pfam transferase family
           domain PF00248
          Length = 457

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 513 STSNCXLVTTWERLTNGLGKIPEFSWYSPLRTG---LPSRPFTSXLLSHLPQR 662
           S S+  L+TTW RL  G     +F W  P+ +G   LP +  T   LSH  QR
Sbjct: 385 SLSSTLLITTWSRL--GF-HTTDFGWGEPILSGPVALPEKEVT-LFLSHGEQR 433


>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1544

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 534 VTTWERLTNGLGKIPEFSWYSPLRTGLPSRP 626
           +  W R  N +G IP F + S + +G+ S+P
Sbjct: 139 IQRWRRALNIIGNIPGFVYRSEMESGVVSKP 169


>At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 613

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 215 FVNMEVKNKMDYVKMMDGCLEREN 286
           F  MEVKN++ +  M+ GC+  +N
Sbjct: 208 FDQMEVKNEVSWTAMISGCVANQN 231


>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 429

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 647 PFAPKNP*PTSLHTEEXTTEGXSPFPPHFMXNHXLPXYXPAXGPPXPXLXPN 802
           P+   +P P + ++     +  SP PP ++ N   P Y     PP P   P+
Sbjct: 308 PYVYSSPPPPTYYSPSPRVDYKSP-PPPYVYNSLPPPYVYNSPPPPPYYSPS 358


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,874,812
Number of Sequences: 28952
Number of extensions: 292362
Number of successful extensions: 719
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)