Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_M05
(860 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 32 0.52
SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9) 30 2.8
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 29 4.9
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73) 29 6.4
SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0) 29 6.4
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034) 28 8.5
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 28 8.5
SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062) 28 8.5
SB_16849| Best HMM Match : RmlD_sub_bind (HMM E-Value=3.3) 28 8.5
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 32.3 bits (70), Expect = 0.52
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 528 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRNEG 349
P + +S+++ PL ++ LP N P+ YP PT P P+ PLP R
Sbjct: 607 PYATRLKSSTNRYPLPTNRYPLPTNRYPLPTNRYP---LPTNRYPIPTNRYPLPKNRYPP 663
Query: 348 PMSQ 337
P Q
Sbjct: 664 PYKQ 667
>SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 607 PXRALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHRAARLVRVEVADEC 452
P A G + + H +P E + RP L H+ RL V + DEC
Sbjct: 704 PRLACAGRDQTYHHSLCIPAE----KPVEEWRPSELGHKLDRLAEVLIIDEC 751
>SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9)
Length = 745
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -2
Query: 637 GQRSYLVVELPXRALRGN---ELSVRHDAVVPREVAALHAAAQQRPQRLQHRAARLVRVE 467
GQR+ E R+ N ++S R + V A + RP L H+ RL V
Sbjct: 592 GQRAKHCAESAVRSSGRNLCKDVSSRPSRIGEDRVGAEKPIEEWRPSELGHKLDRLAEVI 651
Query: 466 VADECDSD 443
+ DEC D
Sbjct: 652 IIDECCKD 659
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 29.1 bits (62), Expect = 4.9
Identities = 28/98 (28%), Positives = 40/98 (40%)
Frame = -3
Query: 639 QASVRIWL*SFPXGLSEAMSCRCATTR*SPARWPRSTPQRSSDRSASSIAPLGSSVLKLP 460
+AS++I +F G + C SP+ R R+ D A+ + P L LP
Sbjct: 1284 EASIKIPTKTFANGQQDIAFSTCTA---SPSGESRPEDTRN-DNPANYVPPWE---LPLP 1336
Query: 459 MNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRNEGP 346
+ P+ L P P P P LPLPP + P
Sbjct: 1337 PSGLPLPLPRLP---LPPLRLPPPHSRLPLPPPKLPPP 1371
>SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 462 PMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRNEGPMS 340
P+ PM + + C S+ E +Y++ L RN+GP S
Sbjct: 56 PLGYPPMHVPAWQITCETLRSRDERAYSIQLTDRRNKGPRS 96
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 327 PCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPS 446
P N G SD SW + CT++ +G T RT T T PS
Sbjct: 410 PVNGGWSDYSSW----SSCTKSCSGGTRTRTRTCTNPKPS 445
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 327 PCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPS 446
P N G SD SW + CT++ G T RT T T PS
Sbjct: 379 PVNGGWSDYSSW----SSCTKSCGGGTRTRTRTCTNPKPS 414
>SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)
Length = 611
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 516 SDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPT 361
+ R +SS + L SSV + +TP L P + + S P PS + LPPT
Sbjct: 276 ASRHSSSSSSL-SSVPSSFLASTPRAATLSPLSSSSSSSSPRPSRDIELPPT 326
>SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 446
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 327 PCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPS 446
P N G SD SW + CT++ G T RT T T PS
Sbjct: 294 PVNGGWSDYSSW----SSCTKSCGGGTRTRTRTCTNPKPS 329
>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 3404
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -3
Query: 228 TGRARYDTCTGIKPSHCFLLTTSQSA----AISVRSELRASASTTAEWRRAMSRSGACQH 61
+G RYD C G + C ++ +A A ++ E+R A+ M+ +G H
Sbjct: 2140 SGLRRYDWCVGKRTDACDVVEMKSAALDTYANAITEEIRTGTQLFAQ-VNVMNNAGHVTH 2198
Query: 60 VSTRACQIL 34
+ ++ C ++
Sbjct: 2199 LVSKPCVVI 2207
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 396 PEPSYTLPLPPTRNEGPMSQYC 331
P P + P PP N GP +YC
Sbjct: 214 PPPPFGAPPPPALNGGPPREYC 235
>SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 675 TRS*WSPRSPA-TQASVRIWL*SFPXGLSEAMSCRCATTR*SPARWPRSTPQRSSDRSAS 499
+RS SP SP+ + +S S G+S++ SC+ T + S W ST QR + S S
Sbjct: 84 SRSYSSPVSPSRSNSSSPRMSRSAKRGISKSKSCQTLTIQKSFEPWKHSTVQRRASLSGS 143
>SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)
Length = 282
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 537 RSTPQRSSDRSASSI-APLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPT 361
+STP+ SS + + + +PL S L + + P AP S P+PS + PP
Sbjct: 147 KSTPRPSSPQPSFQVRSPLFKSAAFLSSPQPSLRVRTPPFKSAPLFSSPQPSLQVRSPPF 206
Query: 360 RN 355
++
Sbjct: 207 KS 208
>SB_16849| Best HMM Match : RmlD_sub_bind (HMM E-Value=3.3)
Length = 355
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = -2
Query: 607 PXRALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHRAARLVRVEVADEC 452
P A G + H +P E + RP L H+ RL V + DEC
Sbjct: 199 PRLACAGRAQTYHHYLCIPAE----KPIEEWRPSELGHKLDRLAEVTIIDEC 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,684,116
Number of Sequences: 59808
Number of extensions: 544564
Number of successful extensions: 1991
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1987
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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