Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_M05
(860 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha ch... 32 0.56
At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha ch... 32 0.56
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ... 30 1.7
At2g02630.1 68415.m00202 DC1 domain-containing protein contains ... 29 3.0
At1g70990.1 68414.m08190 proline-rich family protein 29 3.0
At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamm... 29 3.0
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ... 29 4.0
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro... 29 5.3
At5g17500.1 68418.m02053 glycosyl hydrolase family 5 protein / c... 29 5.3
At5g05680.1 68418.m00625 nuclear pore complex protein-related co... 29 5.3
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ... 28 7.0
At2g27200.1 68415.m03269 GTP-binding family protein contains Pfa... 28 7.0
At5g37850.1 68418.m04557 pfkB-type carbohydrate kinase family pr... 28 9.2
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t... 28 9.2
At2g31920.1 68415.m03899 expressed protein 28 9.2
>At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha
chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
1 (MCCA) nearly identical to SP|Q42523
Methylcrotonyl-CoA carboxylase alpha chain,
mitochondrial precursor (EC 6.4.1.4)
(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
alpha subunit) {Arabidopsis thaliana}
Length = 734
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 511 PQRLQHRAARLVRVEVADECDSDGPRVVPVGVRADVQPAGALVHLAVTSHQERGSDVPVL 332
P R+ H A + + +E +EC+ G ++ +GVR QP G+ + E G+D P L
Sbjct: 539 PFRVHHEAKQTIELEWNNECEGTGSNLISLGVR--YQPDGSYL-------IEEGNDSPSL 589
Query: 331 Q 329
+
Sbjct: 590 E 590
>At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha
chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
1 (MCCA) nearly identical to SP|Q42523
Methylcrotonyl-CoA carboxylase alpha chain,
mitochondrial precursor (EC 6.4.1.4)
(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
alpha subunit) {Arabidopsis thaliana}
Length = 714
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 511 PQRLQHRAARLVRVEVADECDSDGPRVVPVGVRADVQPAGALVHLAVTSHQERGSDVPVL 332
P R+ H A + + +E +EC+ G ++ +GVR QP G+ + E G+D P L
Sbjct: 519 PFRVHHEAKQTIELEWNNECEGTGSNLISLGVR--YQPDGSYL-------IEEGNDSPSL 569
Query: 331 Q 329
+
Sbjct: 570 E 570
>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 922
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -2
Query: 265 EGCDCVLDDDEAHGPRQVRHVHRDQTVPLLF---TDDVAIGCYFCEKRAESERE-YNC 104
E CD L A P+QVR+ H +PL + T D+ C CE + E Y C
Sbjct: 764 EECDYALCFKCATLPQQVRYKHDKHILPLSYGKKTSDMTYWCEACEGKINPEEGFYRC 821
>At2g02630.1 68415.m00202 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 440
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -2
Query: 262 GCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNC 104
GCD +L + A PR+ H + L+F +D C C R + Y C
Sbjct: 193 GCDFILHETCADAPRRKVHPLHPHPLKLIFYEDNCFHCKAC-WRTSTAFGYRC 244
>At1g70990.1 68414.m08190 proline-rich family protein
Length = 176
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -3
Query: 462 PMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRNEGPMSQYC 331
P+ TP L+ P P S P PS P PP P YC
Sbjct: 81 PIKCTPC-LQNIPPPSPPPPSPPPPSQACPPPPLPPSPPKKSYC 123
>At1g60070.1 68414.m06767 gamma-adaptin, putative similar to
gamma-adaptin GI:2765190 from [Homo sapiens]; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 867
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 601 RALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHR 491
RA+R ++ + AVV +E AA+ A+ + Q +HR
Sbjct: 15 RAIRASKTAAEERAVVRKECAAIRASINENDQDYRHR 51
>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
subunit-related contains similarity to Swiss-Prot:P80387
5'-AMP-activated protein kinase, beta-1 subunit (AMPK
beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
Length = 591
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 344 IGPSFLVGGNGKVYEGSGWLHVGA-HTYGYNSR 439
IG SF GNG+V++G G ++G+ +G+N R
Sbjct: 22 IGSSFR-SGNGRVFDGRGIAYLGSREKFGFNRR 53
>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe},
oligopeptide transporter Opt1p [Candida albicans]
GI:2367386; contains Pfam profile PF03169: OPT
oligopeptide transporter protein
Length = 755
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 374 GKVYEGSGWLHVGAHTYGYNSRSIGVAFIGNF 469
G +Y G +V TYGY S S + F+G+F
Sbjct: 501 GYLYPGKPLANVAFKTYGYISMSQALYFVGDF 532
>At5g17500.1 68418.m02053 glycosyl hydrolase family 5 protein /
cellulase family protein predicted protein F3F19.15 -
Arabidopsis thaliana, EMBL:AC007357
Length = 526
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -3
Query: 198 GIKPSHCFLLTTSQSAAISVRSELRASASTTAEWRRAMSRSGACQHVS 55
G+K + +S+R+ELR T+ +W + M + H S
Sbjct: 183 GLKKMATIFMNVKNVVGMSLRNELRGYNHTSKDWYKYMQKGAEAVHTS 230
>At5g05680.1 68418.m00625 nuclear pore complex protein-related
contains weak similarity to Nuclear pore complex protein
Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
protein) (Swiss-Prot:Q99567) [Homo sapiens]
Length = 810
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 149 AADCDVVSKKQWDGLIPVHVS 211
+ +C V K WD L+P+HVS
Sbjct: 545 SGECIVAEMKTWDLLLPIHVS 565
>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 295 QLLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFC 140
Q+L+ + C+ L A+ PR+ HV+R+ LL + + C+ C
Sbjct: 409 QILSEPFYSCKQCNFKLHQKCANHPRKKHHVYRNLPFTLLTSGNEIFQCWLC 460
>At2g27200.1 68415.m03269 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 537
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/82 (24%), Positives = 33/82 (40%)
Frame = -2
Query: 298 HQLLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESE 119
H+ + SV D +++ +A ++ +H D P+ D G A+
Sbjct: 35 HKKVLESVTEVSDIDAIIE--QAEEAERLFAIHHDSATPVPINMDT--GSSSSGITAKEW 90
Query: 118 REYNCRVEAGHVEERRVPARQH 53
+E R EA H +VP R H
Sbjct: 91 KEQRMREEALHASSLQVPRRPH 112
>At5g37850.1 68418.m04557 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 309
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 310 LDIPHQLLAASVRPAEGCDCVLDDD-EAHGPRQVRHVHRDQTVPL 179
L++ ++L + + CD V+ D+ + + P ++ HV+R++ VPL
Sbjct: 106 LEVINKLRSVNPNLTYVCDPVMGDEGKLYVPEELVHVYREKVVPL 150
>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
T15B16.10 similar to A. thaliana CHP-rich proteins
encoded by T10M13, GenBank accession number AF001308
Length = 667
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -2
Query: 298 HQLLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEK 134
H + S CD +L + A PR+ HV ++ + L+ ++ GC C K
Sbjct: 411 HPISPQSFYGCMDCDFILHQNCAGFPRRKWHVLHNERLALVTSEVNIFGCSACHK 465
>At2g31920.1 68415.m03899 expressed protein
Length = 585
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 418 VRADVQPAGALVHLAVTSHQERGSDVPVLQGLHVV 314
+R+D G +++ H E+G VPV++GL V
Sbjct: 78 IRSDEIQLGQFIYICGGLHVEKGCPVPVIRGLKPV 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,424,894
Number of Sequences: 28952
Number of extensions: 351888
Number of successful extensions: 1407
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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