Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M03
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   190   2e-49
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   190   2e-49
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    28   1.5  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    27   2.6  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  190 bits (463), Expect = 2e-49
 Identities = 90/181 (49%), Positives = 113/181 (62%)
 Frame = +1

Query: 100 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 279
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 280 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSXXXXXXXXXXXXXXXXXXXX 459
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+                    
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 460 XXXXXXXXEYNVEPVXNGPGAFXCYLDVGLXRTTTGARVXGAMKGAXDRGXXVPXSXQKI 639
                       E + +GP  F  +LDVGL RT+TG+RV GAMKGA D G  +P S  + 
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180

Query: 640 P 642
           P
Sbjct: 181 P 181


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  190 bits (463), Expect = 2e-49
 Identities = 90/181 (49%), Positives = 113/181 (62%)
 Frame = +1

Query: 100 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 279
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 280 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSXXXXXXXXXXXXXXXXXXXX 459
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+                    
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 460 XXXXXXXXEYNVEPVXNGPGAFXCYLDVGLXRTTTGARVXGAMKGAXDRGXXVPXSXQKI 639
                       E + +GP  F  +LDVGL RT+TG+RV GAMKGA D G  +P S  + 
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180

Query: 640 P 642
           P
Sbjct: 181 P 181


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 201 FTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYKVASTRRTPSKKTN 40
           FT I+   PF    +    P  VL      NE H+LN+ Y    + RTP ++ N
Sbjct: 166 FTVIVTFSPFKVEFQRDGEPQVVL------NERHLLNMEYYRPKSSRTPEQEAN 213


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = -1

Query: 201 FTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYKVASTRRTPSKKTNLKEFP 25
           F +I  SF   +PL FY  P      ++NF+  H  N S+K  S++ T  K +N K  P
Sbjct: 17  FFNISSSFNEHSPLNFYDEP------IYNFSSGHEENQSHK--SSKLTFFKPSNTKRSP 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,488
Number of Sequences: 5004
Number of extensions: 51526
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)