Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_M03
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 182 4e-46
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 179 2e-45
01_01_0570 - 4231100-4232560 30 2.8
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 4.8
06_02_0127 + 12140843-12140966,12141170-12141567 29 4.8
06_02_0123 + 12104187-12104252,12105455-12105775 29 4.8
06_02_0122 - 12095385-12095713,12096018-12096120 29 4.8
03_02_0765 + 11000724-11002496 29 4.8
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 29 4.8
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 8.5
06_01_0486 - 3455030-3455770 28 8.5
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875... 28 8.5
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156... 28 8.5
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 182 bits (442), Expect = 4e-46
Identities = 94/178 (52%), Positives = 111/178 (62%)
Frame = +1
Query: 103 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 282
GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 283 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSXXXXXXXXXXXXXXXXXXXXX 462
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119
Query: 463 XXXXXXXEYNVEPVXNGPGAFXCYLDVGLXRTTTGARVXGAMKGAXDRGXXVPXSXQK 636
+Y VEP + F LDVGL RTTTG RV GA+KGA D G +P S ++
Sbjct: 120 NVEATGEDYYVEPA-DERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKR 176
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 179 bits (436), Expect = 2e-45
Identities = 93/178 (52%), Positives = 110/178 (61%)
Frame = +1
Query: 103 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 282
GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 283 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSXXXXXXXXXXXXXXXXXXXXX 462
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119
Query: 463 XXXXXXXEYNVEPVXNGPGAFXCYLDVGLXRTTTGARVXGAMKGAXDRGXXVPXSXQK 636
+Y VEP + F LDVGL RTTTG RV GA+KGA D G +P S ++
Sbjct: 120 NIEATGEDYYVEPA-DERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKR 176
>01_01_0570 - 4231100-4232560
Length = 486
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 867 GXGXGGGFXXXXGXXGHXXGDFXGGRYXG 781
G G GGGF G G+ DF GG+ G
Sbjct: 283 GMGGGGGFGGGGGVGGNTGRDFDGGKGNG 311
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
PP LPP P P P PPP P P
Sbjct: 426 PPPPLPPPPPPPPPPPPPLPPNMPPPLPPP 455
>06_02_0127 + 12140843-12140966,12141170-12141567
Length = 173
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 867 GXGXGGGFXXXXGXXGHXXGDFXGGRYXGG 778
G G GGG+ G G+ G + GG Y GG
Sbjct: 138 GGGGGGGYSKGFG-GGYGGGGYPGGGYYGG 166
>06_02_0123 + 12104187-12104252,12105455-12105775
Length = 128
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 867 GXGXGGGFXXXXGXXGHXXGDFXGGRYXGG 778
G G GGG+ G G G GG Y GG
Sbjct: 86 GCGYGGGYGGYGGGYGGGYGGGYGGGYSGG 115
>06_02_0122 - 12095385-12095713,12096018-12096120
Length = 143
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 867 GXGXGGGFXXXXGXXGHXXGDFXGGRYXGG 778
G G GGG+ G G G GG Y GG
Sbjct: 101 GRGYGGGYGGSGGGYGGGYGGGYGGGYGGG 130
>03_02_0765 + 11000724-11002496
Length = 590
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -1
Query: 867 GXGXGGGFXXXXGXXGHXXGDFXGGRYXG 781
G G GGGF G G G F GG+ G
Sbjct: 57 GGGAGGGFGGGLGHGGGLGGGFGGGKGGG 85
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -1
Query: 867 GXGXGGGFXXXXGXXGHXXGDFXGGRYXG 781
G G GGGF G G G F GG+ G
Sbjct: 95 GGGAGGGFGGGLGHGGGLGGGFGGGKGGG 123
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 743 TXMMXDSXXQXXPPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
T S Q P LPP CPF PPP P P
Sbjct: 6 TTSSSSSNSQNPNPFNLPPWLRSLRCPFTFLCPPPPPPPPPP 47
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 782 PXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
P PP P P P PPP PLP
Sbjct: 1161 PPSPPPATPPPPPPLSPSLPPPPPPPPLP 1189
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
PP Y+PP P P+ P P P +P
Sbjct: 96 PPPYVPPYIPPPTPPYVPPYIPPPTPPYVP 125
>02_05_0602 +
30283893-30284170,30286259-30286305,30286534-30287510,
30287611-30287920,30288561-30290197
Length = 1082
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -1
Query: 117 NFNESHILNLSYKVASTRRTPSKKTNLKEFP 25
NFNES + + A RRTPS T + EFP
Sbjct: 122 NFNESGAAIMERQTA--RRTPSSVTQMPEFP 150
>01_01_0182 -
1561779-1561873,1561977-1562050,1562140-1562207,
1562279-1562371,1562521-1562604,1562697-1562752,
1562843-1562950,1563051-1563225,1563237-1563422
Length = 312
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -1
Query: 291 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 112
HL Y + + ++ FR +NN +TS ++++ T+P Y + +LF+ H
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170
Query: 111 NESH 100
+ H
Sbjct: 171 GDIH 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,445,968
Number of Sequences: 37544
Number of extensions: 365886
Number of successful extensions: 1107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -