Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_M03
(870 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 125 5e-29
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 122 3e-28
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 29 3.7
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 6.5
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 8.6
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 125 bits (301), Expect = 5e-29
Identities = 59/111 (53%), Positives = 70/111 (63%)
Frame = +1
Query: 289 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSXXXXXXXXXXXXXXXXXXXXXXX 468
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 469 XXXXXEYNVEPVXNGPGAFXCYLDVGLXRTTTGARVXGAMKGAXDRGXXVP 621
EYNVE + PGAF C+LDVGL RT+TGARV GA+KGA D G +P
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIP 111
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 122 bits (295), Expect = 3e-28
Identities = 78/197 (39%), Positives = 100/197 (50%), Gaps = 37/197 (18%)
Frame = +1
Query: 163 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 252
RR +GKTDYYARKR ++ Q++NK P KYR
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76
Query: 253 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSXXXX 411
R NK ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY
Sbjct: 77 NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136
Query: 412 XXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVXNGPGAFXCYLDVGLXRTTTGARVXGAMK 591
EYNVE V PGAF C+LDVGL RT+TGARV GA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196
Query: 592 GAXDRGXXVPXSXQKIP 642
GA D G +P S ++ P
Sbjct: 197 GAVDGGLEIPHSMKRFP 213
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 867 GXGXGGGFXXXXGXXGHXXGDFXGGRYXGG 778
G G GG G GH G + GG Y GG
Sbjct: 170 GYGGGGYGGGGYGGGGHGGGGYGGGGYGGG 199
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
PP PP P P P PPP P P
Sbjct: 1157 PPPPPPPPPPPPSSPSPPPPPPPPPPPPTP 1186
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
PP PP SP P P PPP P P
Sbjct: 379 PPPPPPPPPSPPPPPQPPPPPPPPPPPPPP 408
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
PP PP SP P P PPP P P
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPP 397
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 250 LIVRLSNKDVTCQVAYSRIEGD-HIVC 327
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 186 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 79
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 298 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 396
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 867 GXGXGGGFXXXXGXXGHXXGDFXGGRYXGG 778
G G GGG G G+ G GG Y GG
Sbjct: 762 GGGYGGGGGGYRGGGGYGGGHRGGGGYGGG 791
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,097,421
Number of Sequences: 59808
Number of extensions: 417088
Number of successful extensions: 1272
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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