Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M03
         (870 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   181   6e-46
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   180   1e-45
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    35   0.081
At5g26080.1 68418.m03103 proline-rich family protein contains pr...    33   0.33 
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    30   1.7  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    30   2.3  
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ...    29   4.0  
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   7.1  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   7.1  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    28   7.1  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  181 bits (440), Expect = 6e-46
 Identities = 90/179 (50%), Positives = 112/179 (62%)
 Frame = +1

Query: 100 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 279
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 280 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSXXXXXXXXXXXXXXXXXXXX 459
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY                     
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 460 XXXXXXXXEYNVEPVXNGPGAFXCYLDVGLXRTTTGARVXGAMKGAXDRGXXVPXSXQK 636
                   +++VEP  +    F   LDVGL RTTTG RV GA+KGA D G  +P S ++
Sbjct: 121 GNVEATGEDFSVEPT-DSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKR 178


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  180 bits (438), Expect = 1e-45
 Identities = 90/179 (50%), Positives = 112/179 (62%)
 Frame = +1

Query: 100 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 279
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 280 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSXXXXXXXXXXXXXXXXXXXX 459
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY                     
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 460 XXXXXXXXEYNVEPVXNGPGAFXCYLDVGLXRTTTGARVXGAMKGAXDRGXXVPXSXQK 636
                   +++VEP  +    F   LDVGL RTTTG RV GA+KGA D G  +P S ++
Sbjct: 121 GNVEATGEDFSVEPT-DSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKR 178


>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = +2

Query: 725 PSQSP*TXMMXDSXXQXXPPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
           PS SP             PP   PP  SP  CP  P     PPP  LP
Sbjct: 48  PSPSPEPEPEPADCPPPPPPPPCPPPPSPPPCPPPPSPPPSPPPPQLP 95


>At5g26080.1 68418.m03103 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 141

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPL 865
           PP Y PP  SP   P  P     PPP P+
Sbjct: 78  PPIYPPPIYSPPPPPIYPPPIYSPPPTPI 106


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPL 865
           PP + PP  SP   P  P     PPP P+
Sbjct: 496 PPVHSPPPPSPIHSPPPPPVYSPPPPPPV 524



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXP 862
           PP Y PP   P   P  P     PPP P
Sbjct: 513 PPVYSPPPPPPVYSPPPPPPVYSPPPPP 540


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
           PP Y PP  SP   P  P     PPP P P
Sbjct: 477 PPVYSPPPPSPPPPP-PPVYSPPPPPPPPP 505



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
           PP Y PP   P   P        PPP P P
Sbjct: 433 PPVYSPPPPPPPPPPVYSPPPPPPPPPPPP 462



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
           PP   PP  SP   P  P     PPP P P
Sbjct: 428 PPSPPPPVYSPPPPPPPPPPVYSPPPPPPP 457



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
           PP Y PP   P   P  P     PPP P P
Sbjct: 446 PPVYSPPPPPPPPPP-PPVYSPPPPPPPPP 474



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 779 PPXYLPPXKSPXXCPFXPXXXXXPPPXPLP 868
           PP Y PP   P   P  P     PPP P P
Sbjct: 461 PPVYSPPPPPPPPPP-PPPVYSPPPPSPPP 489


>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
           protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 423

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 867 GXGXGGGFXXXXGXXGHXXGDFXGGRYXGG 778
           G G GGG     G  G   G + GG Y GG
Sbjct: 254 GGGYGGGRSGGYGGYGGEFGGYGGGGYGGG 283


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +1

Query: 118 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 291
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +1

Query: 118 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 291
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = +2

Query: 725 PSQSP*TXMMXDSXXQXXPPXYL-PPXKS-PXXCPFXPXXXXXPPPXPLP 868
           P +SP +    D      PP  L PP  S P   P  P     PPP  LP
Sbjct: 150 PPESPPSLPAPDPPSNPLPPPKLVPPSHSPPRHLPSPPASEIPPPPRHLP 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,245,212
Number of Sequences: 28952
Number of extensions: 287206
Number of successful extensions: 1231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)