Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_M02
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 222 LILPKITTLMETATNLSTTVHI-TWTLP 302
           L+LPK+T  +E    L+ TV I TW  P
Sbjct: 518 LVLPKLTLEVEEWNPLTDTVPIHTWIHP 545


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 280  CILRGPSPRPTLLQAYPLS-LVLAVGSKEYL 369
            C+LR  +P P +L+A   S  VL V ++ +L
Sbjct: 1106 CVLRASTPAPVVLEAVHASRRVLIVLTRNFL 1136


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = -2

Query: 744 GGGXXGXXGXXXGXEXGXXGXXXXXGGGGGG 652
           G G     G   G   G        GGGGGG
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 309 DLTSSLPPFPGARGGK 356
           DL   LPP P  RGG+
Sbjct: 370 DLDEPLPPPPPIRGGE 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,031
Number of Sequences: 438
Number of extensions: 5646
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)