Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L24
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.100
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.23 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   2.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.100
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 601 SXPPPRPAXXXPTPXXPPPPXPP 669
           S PPP PA   PTP   P P PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPP 753



 Score = 28.7 bits (61), Expect(2) = 0.27
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 607 PPPRPAXXXPTPXXPPPPXPPXHXG 681
           PPP P      P  PPPP P    G
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 607 PPPRPAXXXPTPXXPPPPXPP 669
           PPP P         PPPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 607 PPPRPAXXXPTPXXPPPPXPP 669
           PPP P         PPPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 607 PPPRPAXXXPTPXXPPPPXPP 669
           PPP P         PPPP PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 607 PPPRPAXXXPTPXXPPPPXPPXHXG 681
           PPP P    P    PPPP PP   G
Sbjct: 752 PPPAPIMGGP----PPPPPPPGVAG 772



 Score = 20.6 bits (41), Expect(2) = 0.27
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = +1

Query: 472 VPXSPPXXXXXXXPRPPP 525
           +P  PP       P PPP
Sbjct: 749 IPVPPPAPIMGGPPPPPP 766


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 607 PPPRPAXXXPTPXXPPPPXPPXH 675
           PPP P      P  PPPP PP +
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGY 32



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 607 PPPRPAXXXPTPXXPPPPXPP 669
           PPP P      P   PPP PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 601 SXPPPRPAXXXPTPXXPPPPXPP 669
           S PP  P    P P   PP  PP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPP 25


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 24/71 (33%), Positives = 24/71 (33%)
 Frame = -3

Query: 723 GVXGXXGGGXGGGPPXVXXXXXXXXXXXXGXXXXGPRGGXRXXXKGXKXXFFFGGPGXEA 544
           G  G  GGG GG PP              G    G  GG      G     F GGPG   
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGG-HGGFGGGPGG-----FEGGPGGFG 241

Query: 543 XXGAGXGGGAG 511
               G GGG G
Sbjct: 242 GGPGGFGGGLG 252



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 22/70 (31%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
 Frame = -1

Query: 803 GGGXGXXXXXXFFGGGXXAGXRGGRXGGXXXXXXXXXXG--ARPXWXGGXGG--GGXXGV 636
           GG  G       FGG    G  G   GG                 + GG GG  GG  G 
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254

Query: 635 GXXXAGRGGG 606
           G    G GGG
Sbjct: 255 GGGPGGFGGG 264



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
 Frame = -1

Query: 809 GXGGGXGXXXXXXFFGG-GXXAGXRGGRXGGXXXXXXXXXXGARPXWXGGXGG--GGXXG 639
           G GG  G        GG G   G  GG  GG               + GG GG  GG  G
Sbjct: 206 GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG-----FGGGLGGFGGGPGG 260

Query: 638 VGXXXAGRGG 609
            G    G GG
Sbjct: 261 FGGGPGGHGG 270


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/46 (36%), Positives = 18/46 (39%)
 Frame = -1

Query: 746 GXRGGRXGGXXXXXXXXXXGARPXWXGGXGGGGXXGVGXXXAGRGG 609
           G RGGR G             R  + GG GG    G G    GRGG
Sbjct: 6   GSRGGRGGSRGGRGGFNG--GRGGFGGGRGGARGGGRGGARGGRGG 49



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/54 (40%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -1

Query: 764 GGGXXAGXRGGRXGGXXXXXXXXXXGARPXWXGGXGG--GGXXGVGXXXAGRGG 609
           G G   G RGG  GG          GAR    GG GG  G   G G    GRGG
Sbjct: 17  GRGGFNGGRGGFGGGRGGARGGGRGGAR----GGRGGRGGARGGRGGSSGGRGG 66


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 723  PXPXPPXARXXPPPKKPXXXSXPP 794
            P P PP     PPP  P   + PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP 1728



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 607  PPPRPAXXXPTPXXPPPPXPP 669
            PPP P    P P  PP P  P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGP 1727



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +1

Query: 601  SXPPPRPAXXXPT--PXXPPPPXP 666
            S PPP  A   P   P  PPPP P
Sbjct: 1713 SVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 482 PPLLXXXFXXPAPPPXPAPXXASXPGPP 565
           PP        PAPPP P P   +   PP
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPP 268


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/52 (34%), Positives = 19/52 (36%)
 Frame = -3

Query: 621 GPRGGXRXXXKGXKXXFFFGGPGXEAXXGAGXGGGAGXXXXXXXRGGXRNXS 466
           G RGG R    G +  F   G       G G  GG G       RGG R  S
Sbjct: 138 GGRGGFRGGRGGSRGGF---GGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGS 186



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -3

Query: 909 GXXGRGXGXGXRAXRGXFAXXXXXXXXXXXGGGXXGGXXG 790
           G  GRG   G R  RG              GGG  GG  G
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGG 172



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = -3

Query: 621 GPRGGXRXXXKGXKXXFFFGGPGXEAXXGAGXGGGAGXXXXXXXRGGXR 475
           G RGG R    G     F  G G     G G  GG+        RGG R
Sbjct: 145 GGRGGSRGGFGGNSRGGF--GGGSRGGFGGGSRGGSRGGFRGGSRGGFR 191


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 512 PAPPPXPAPXXASXPGPP 565
           P PPP PAP  A+ P PP
Sbjct: 6   PPPPPAPAP-AAAAPAPP 22



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 723 PXPXPPXARXXPPPKKPXXXSXPPP 797
           P P  P +   PP   P   S PPP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPP 152



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 601 SXPPPRPAXXXPTPXXPPP 657
           S PPP PA   P P   PP
Sbjct: 148 SIPPPSPASAPPIPSKAPP 166


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/77 (24%), Positives = 21/77 (27%), Gaps = 4/77 (5%)
 Frame = +1

Query: 451 YXXPGGXVPX-SPPXXXXXXXPRPPPXXXXXXXXXXXXXXXXXXXXXXXXXSXPP---PR 618
           +  P    P  S P       P PPP                           PP   P+
Sbjct: 171 FQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPK 230

Query: 619 PAXXXPTPXXPPPPXPP 669
            A   P P  PPPP  P
Sbjct: 231 QADPLPAPPPPPPPTLP 247


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 607  PPPRPAXXXPTPXXPPPPXPP 669
            PPP  A   P P    PP PP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP 1212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,271
Number of Sequences: 5004
Number of extensions: 39258
Number of successful extensions: 282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)