Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L23
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    29   0.86 
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    28   1.5  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    27   3.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   4.6  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   8.1  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   8.1  

>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 609 RKLLSAQI*TAHWKKIPVLIPWDPDTEP 692
           +KLL       H K IP L+ W+PD  P
Sbjct: 286 QKLLPQNCPEGHAKMIPCLLAWNPDVRP 313


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 273 TTSGSIGHMSYCGIPLLVFSKNCSVALLRHCMSXKFAGF*KSISIGSHVSS 121
           TTS SIG+ ++ GI     S+ C+ AL +  +S  F    + I IG ++ S
Sbjct: 146 TTSNSIGNQAFIGI-----SEACAEALTQFSVSEVFFEHERGIKIGIYILS 191


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 465 DCLVNSITMSPTICKSAFVFSSTVLALVSIWKSDICWFFRPVMFKFLKRITTPASFG-AI 289
           + L N + + P +  S    SSTVL   + W + I  F   +    L  + T A+FG AI
Sbjct: 351 ELLFNPMELFPQVINSCSPSSSTVLCETTFWVTAIVLFTSAL----LGLLLTSATFGAAI 406

Query: 288 TSNDVTTSGSIG 253
            +  +  S +IG
Sbjct: 407 PTGIIVPSLAIG 418


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 18  HYRESLRFEFDVSSSLGFTA 77
           H+ +S+ F+FD SSS  F A
Sbjct: 691 HFLKSMNFDFDASSSAAFNA 710


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 93  RSHFDVP*SLMRN*HRTQILRI 28
           R  FD+  SL RN H+T+ILR+
Sbjct: 63  RKRFDLQDSLSRNSHKTRILRM 84


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 572 QPETFTCESIGEPKVTLSSDLNSALEK 652
           +P+TF C+S  EP   ++S L    EK
Sbjct: 684 EPQTFNCDSFNEPGTEITSFLYDFDEK 710


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 434 GDIVIELTKQSKSFTGLYTADTNVIGAVRYGYNLKND 544
           G IVI L    +S   L+  D   I  + YG  +  D
Sbjct: 139 GSIVINLRDSGESLPPLFFHDDECISTIEYGKQITRD 175


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 986

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +2

Query: 470  SFTGLYTADTNVIGAVRYGYNLKNDDNGV---QHFEVQPETFTCESIGEPKVTLSSDLNS 640
            + T +Y+ D+ ++ +V+    L +  N +      ++ PE ++  S+GE  + L S+   
Sbjct: 836  AMTKIYSFDSPLLDSVQVKGELISHSNRIITRSQSKLHPEEYSYVSVGEKILRLLSEEFV 895

Query: 641  ALEKDS 658
            +L KD+
Sbjct: 896  SLSKDA 901


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,521,945
Number of Sequences: 5004
Number of extensions: 73936
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)