Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L23
         (873 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)               29   3.8  
SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_34575| Best HMM Match : zf-TRAF (HMM E-Value=2.5e-15)               28   8.7  

>SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)
          Length = 684

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 241 IRHMAYRSTSCDVIGCNCSKRCGSRDTLQKFKHHGSKE 354
           IR +      C  +  +CS  CG+R   ++   H SK+
Sbjct: 134 IRSLVGHLAECKFVSADCSNSCGARIQKRRMSEHTSKD 171


>SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 548 NGVQHFEVQPETFTCESIGEPKVTL-SSDLNSALEKDSGTNS 670
           N + H +++PE   CESI   ++ L    L   L+KD    S
Sbjct: 467 NNIVHLDLKPENIMCESINSNQIKLVDFGLARELKKDEEVKS 508


>SB_34575| Best HMM Match : zf-TRAF (HMM E-Value=2.5e-15)
          Length = 262

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 241 IRHMAYRSTSCDVIGCNCSKRCGSRDTLQKFKHHGSKE 354
           +R +      C  +  +CS  CG+R   ++   H SK+
Sbjct: 49  LRKLQGHLAECKFVSADCSNSCGARIQKRRMSEHTSKD 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,849,685
Number of Sequences: 59808
Number of extensions: 543335
Number of successful extensions: 1061
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)