Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L23
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    31   1.1  
Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z30662-2|CAA83135.1|  181|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z82274-9|CAB05232.2|  260|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   7.6  
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
            class iii (c) protein1 protein.
          Length = 1400

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 429  ICKSAFVFSSTVLALVSIWKSDICWFFRPVMFKFLKRITTP-ASFGAITSNDV 274
            ICK+   + +++LA   + K+ +C F     +K  + IT P  + GAI +  +
Sbjct: 1002 ICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSI 1054


>Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical
           protein F28C12.2 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 668 SLGPRYGAFENVKTSSYL*NSRILLYQCCAQHQSFXQNL 784
           S G RY A+ENV TS  +  S +L +  C    SF  NL
Sbjct: 230 SPGERYSAYENVTTSQSICISIVLQFS-CIMISSFGSNL 267


>Z30662-2|CAA83135.1|  181|Caenorhabditis elegans Hypothetical
           protein T16H12.2 protein.
          Length = 181

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -3

Query: 208 LLCRTAKALHVXQVCRVLEEHLHRKPRI*QTQKPGIL---SKKPF*CAVKPNEELTS 47
           ++CRT +  HV  VC +L       P+I + ++  ++    KK F      +E+LTS
Sbjct: 113 IVCRTCQQSHVKAVCPILYPKKDTPPKILRARRRSLIRAQKKKDFQEPENKHEQLTS 169


>Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical
           protein Y48E1B.5 protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 191 SSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPND 304
           SS   Q L K     P  DI+PI P++  S+D I  +D
Sbjct: 313 SSIFHQKLSKIFSAEPLPDIYPISPVIDFSMDTIYNDD 350


>Z82274-9|CAB05232.2|  260|Caenorhabditis elegans Hypothetical
           protein JC8.5 protein.
          Length = 260

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 496 IGRVKSCEGLRLFSQLDYDVPNNM*IGFRLQQHRL 392
           I  +K CE   +  Q + DVP++M   F+ QQH +
Sbjct: 105 IANMKKCEDRLIRVQFNSDVPSSMRWEFKPQQHEI 139


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 512 AVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPKVTLSSDLNSALEKDSG 661
           A R G + +N++  V H    PET  CE +   ++ +  +    L+   G
Sbjct: 468 AARPGTSCQNEEECVDHSYCSPETNKCECMKASQMVIGGECRERLKAHPG 517


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 512 AVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPKVTLSSDLNSALEKDSG 661
           A R G + +N++  V H    PET  CE +   ++ +  +    L+   G
Sbjct: 468 AARPGTSCQNEEECVDHSYCSPETNKCECMKASQMVIGGECRERLKAHPG 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,364,500
Number of Sequences: 27780
Number of extensions: 418618
Number of successful extensions: 1025
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)