Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L23
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    38   1e-04
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.91 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +2

Query: 182 QCLSSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPNDAGVVIR--FKNLNITGL-K 352
           QC++ A    +   + G+  + I PI+PL V S+  I  +   V +R  +KN+ + GL K
Sbjct: 42  QCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVK-IGESQGSVTLRQEYKNIKLYGLTK 100

Query: 353 NQQISDFQM 379
           N +I ++ +
Sbjct: 101 NLEIKNYNI 109


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = -1

Query: 396 VLALVSIWKSDICWFFRPVM---FKFL-KRITTPASFGAIT-SNDVTT-SGSIGHMSYCG 235
           +L +V IW   I W   PVM    +F+ +   T  SF  +T +N++     +I   SYC 
Sbjct: 163 ILFIVLIWTYTIPWALMPVMGVWGRFVPEGFLTSCSFDYLTDTNEIRIFVATIFTFSYC- 221

Query: 234 IPLLV 220
           IP+++
Sbjct: 222 IPMIL 226


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 551 GVQHFEVQPETFTCESIGEPKVT 619
           G+ H +V+P+       G+PK+T
Sbjct: 175 GIVHADVKPKNILMSKNGQPKLT 197


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 572 QPETFTCESIGEPKVTLS 625
           +P TFTC   G P  T+S
Sbjct: 323 RPATFTCNVRGNPIKTVS 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,540
Number of Sequences: 438
Number of extensions: 4759
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)