Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L22
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    27   3.5  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   4.7  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     27   4.7  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   4.7  

>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 171 VIKRNIIVALALSGVAGFTFKQLIGNER 254
           V  R IIV  A   VA FTF+QL G  +
Sbjct: 311 VFGRKIIVPKASGNVAWFTFEQLCGEPK 338


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 621 QLIMVTNKAIASQISQNKAFFSLHXSCGCPNSSMYLIMS 505
           QL++   K      S ++A  S   SC  PNSS+ LI+S
Sbjct: 646 QLLISMTKITEHFQSLDEALQSARSSCAVPNSSLDLIVS 684


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 252 RKRKYAEFYRTYDAEKE-FEEMRKK 323
           RK  Y ++Y T+D  KE F+E++K+
Sbjct: 375 RKLGYTDYYDTFDGFKETFDELKKQ 399


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 83  NFSKIIIRHGWRKCSIDSEQASDA 154
           N SK +I++GW + S++SE  SDA
Sbjct: 472 NKSKYLIKNGWFEDSLNSEIWSDA 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,957
Number of Sequences: 5004
Number of extensions: 42743
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)