Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L22
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)                   54   1e-07
SB_7275| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.6  
SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)            29   5.0  
SB_37231| Best HMM Match : TadE (HMM E-Value=4.5)                      29   5.0  
SB_34530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_39352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)
          Length = 187

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 26/60 (43%), Positives = 39/60 (65%)
 Frame = +3

Query: 135 ASKPQMRGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 314
           A  PQ+RG++   +K++I+ A     VAG  +K L  +  K+KYA+FY+ YDAEK  +EM
Sbjct: 121 AMAPQLRGIVVRTLKKDILHASIAGIVAGCAWKFLYADPLKKKYADFYKNYDAEKVAKEM 180


>SB_7275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 617 SCNKQVNNHQLPFILCFXVQGGXVGRFXLP**I--RPTPGEKRFA 745
           S N+  NN+ +  I    ++GG VG+  +P  +  RPT GE+RFA
Sbjct: 39  SGNELDNNNTIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFA 83


>SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 614 ISCNKQVNNHQLPFILCFXVQGGXVGRFXLP**I--RPTPGEKRFA 745
           I  +K    H +  I    ++GG VG+  +P  +  RPT GE+RFA
Sbjct: 123 IEASKDFAKHFIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFA 168


>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
          Length = 1728

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
 Frame = +2

Query: 611  IISCNKQVN-NHQLPFILCFXVQGGXVGRFXLP**I--RPTPGEKRFA 745
            I + NK ++ N+++  I    ++GG VG+  +P  +  RPT GE+RFA
Sbjct: 1648 IQASNKMLSINNKIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFA 1695


>SB_37231| Best HMM Match : TadE (HMM E-Value=4.5)
          Length = 361

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 687 WEGFXCLNESGQPPGKSGLR 746
           WEG+  LNE   PP K G R
Sbjct: 235 WEGWRMLNEEATPPSKGGER 254


>SB_34530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 269 SILSLALITNELL-EGKTSDARESQSNNNVTFDDGVEETSHLRLARCR 129
           +++ +AL T  +L EGKT  A      N   F +   + SHL + +C+
Sbjct: 197 TVILVALATAVILFEGKTVHALHFYHGNGQPFSEPAAKCSHLAVTKCQ 244


>SB_39352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 626 KQVNNHQLPFILCFXVQGGXVGRFXLP**I--RPTPGEKRFA 745
           K+ +N  +  I    ++GG VG+  +P  +  RPT GE+RFA
Sbjct: 58  KEHHNTNIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFA 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,342,155
Number of Sequences: 59808
Number of extensions: 330732
Number of successful extensions: 1367
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)