Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L22
         (881 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56700.1 68418.m07077 F-box protein-related contains a partia...    31   1.3  
At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containi...    30   2.4  
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi...    29   4.1  
At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi...    28   9.5  
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po...    28   9.5  

>At5g56700.1 68418.m07077 F-box protein-related contains a partial
           F-box domain Pfam:PF00646
          Length = 360

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 606 TNKAIASQISQNKAFFSLHXSCGCPNSSMYLIM 508
           T +A+++ + +N   F     CGCPNSS  L+M
Sbjct: 21  TKEAVSTSVCRNNGSF---FGCGCPNSSSTLVM 50


>At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 763

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 156 GLLNAV-IKRNIIVALALSGVA---GFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 314
           GL+NAV     I   L + G+    GF  +  +GN     YA+F    DA+K FE++
Sbjct: 377 GLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDI 433


>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 501

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 219 GFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGL 329
           GF F   +GN     Y    +T DA K F+EM ++ +
Sbjct: 143 GFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNV 179


>At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 850

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 195 ALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 314
           A ALS V GF     +GN     Y+      DA K F+EM
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188


>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
           potassium channel protein identical to SKOR [Arabidopsis
           thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
           6 transmembrane (1P/6TM) Shaker K+ channel family,
           PMID:11500563
          Length = 828

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 248 ITNELLEGKTSDARESQSNNNVTFDDGVEE 159
           I N LLEGK S+ R  Q  +++TF    +E
Sbjct: 516 ILNNLLEGKESNVRIKQLESDITFHISKQE 545


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,202,362
Number of Sequences: 28952
Number of extensions: 235569
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)