Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L21
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275...    31   1.6  
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760...    31   1.6  
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49...    29   4.8  
01_01_0707 - 5453933-5454619                                           29   6.4  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  

>07_03_1691 -
           28726307-28726323,28726588-28726953,28727483-28727567,
           28728255-28728387,28729793-28730328
          Length = 378

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 501 GRVAGVFPXAPPPDEHHKNRRSSQXWRNPTGL 596
           G  AG  P  PPP  HH+  RS   +R P  L
Sbjct: 37  GGGAGPTPPPPPPPPHHRRARSEVAFRFPDDL 68


>06_03_1190 -
           28274801-28275163,28275662-28275853,28275965-28276088,
           28276177-28276320,28276524-28276640,28277189-28277308,
           28277433-28277521,28277609-28277685,28278250-28278322,
           28278578-28279012,28280247-28280442,28281270-28281490,
           28281591-28281703,28282552-28283146,28283236-28283418,
           28283548-28283712,28283808-28284029
          Length = 1142

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 607 RRFPPGSSLVRSPXSDPAXYRIPVRLSPLR-EAWRFLIPH 723
           R  PP    +      PA YR+P+R    R E W+  IPH
Sbjct: 109 RHCPPAHRRLNCLIPPPAGYRVPIRWPRSRDEVWKANIPH 148


>12_01_0059 +
           494876-494924,496060-496211,496344-496531,496971-497027,
           497123-497282,497389-497457,497712-497837,497972-498091
          Length = 306

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 537 PDEHHKNRR---SSQXWRNPTGL*RYQAFPPWKLPRALSXFRPCXLPD 671
           P +H  N     SS+ + +P G+  +  FP   LP A S ++P  LP+
Sbjct: 10  PGKHRLNDTLLTSSRNYVSPQGILEFYNFPIPSLPSASSNYQPSSLPE 57


>01_01_0707 - 5453933-5454619
          Length = 228

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 522 PXAPPPDEHHKNRRSSQ 572
           P APPPDEHH      Q
Sbjct: 145 PAAPPPDEHHPRHEPQQ 161


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 290 NESAN---ARGEAVCVLGALPLPRSLTRCAR 373
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,621,675
Number of Sequences: 37544
Number of extensions: 411125
Number of successful extensions: 1141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)