Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L20
         (839 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015553D6 Cluster: PREDICTED: hypothetical protein;...    34   5.1  
UniRef50_UPI00015B5B63 Cluster: PREDICTED: similar to peroxisome...    33   6.8  

>UniRef50_UPI00015553D6 Cluster: PREDICTED: hypothetical protein;
           n=4; Amniota|Rep: PREDICTED: hypothetical protein -
           Ornithorhynchus anatinus
          Length = 477

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = +2

Query: 719 GGGGGGXXXXXXKKKKKXXGXGXAPXQKXXXXXPPPPPP 835
           GG  G          KK  G G AP Q      PPPPPP
Sbjct: 139 GGRPGTGVRQMPSPPKKRAGAGPAPGQSPAPPPPPPPPP 177


>UniRef50_UPI00015B5B63 Cluster: PREDICTED: similar to peroxisome
            proliferator-activated receptor binding protein; n=1;
            Nasonia vitripennis|Rep: PREDICTED: similar to peroxisome
            proliferator-activated receptor binding protein - Nasonia
            vitripennis
          Length = 1804

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +2

Query: 719  GGGGGGXXXXXXKKKKKXXGXGXAPXQKXXXXXPPPPPP 835
            GGGGG       K          +P +K     PPPPPP
Sbjct: 1673 GGGGGSVSSLPLKSAMSFAASSSSPIRKNTTPPPPPPPP 1711


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,334,937
Number of Sequences: 1657284
Number of extensions: 7559929
Number of successful extensions: 101965
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71487
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)