Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L20
         (839 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   7.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.2  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   9.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   9.2  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 51  FEDPQSGHWLXDNLNTS 101
           +  P  G W  DNLN +
Sbjct: 218 YASPLDGEWQRDNLNAN 234


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 397 PPXFFXXPPXXGXPXRG 347
           PP  +  PP  G P +G
Sbjct: 61  PPHHYGGPPSGGQPPQG 77


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
          transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 10 FITNSPXRGNSFKNLKIRNQXIGFXI 87
          FI N       F N    NQ +GF I
Sbjct: 6  FIENQAGNAPVFNNYMDENQALGFKI 31


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 10  FITNSPXRGNSFKNLKIRNQXIGFXI 87
           FI N       F N    NQ +GF I
Sbjct: 26  FIENQAGNAPVFNNYMDENQALGFKI 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,064
Number of Sequences: 336
Number of extensions: 1529
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)