Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_L20
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0355 + 16705281-16706006 32 0.65
05_04_0296 - 19943253-19944159,19944239-19945031,19945434-199454... 32 0.65
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256... 32 0.65
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 30 2.6
11_06_0016 - 19284810-19284926,19285527-19286879 29 3.5
04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386... 29 3.5
05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634 29 4.6
11_01_0333 + 2490132-2491007 29 6.1
05_01_0198 + 1429396-1430640 29 6.1
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159... 28 8.1
09_04_0112 - 14757947-14758972 28 8.1
05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922 28 8.1
01_03_0005 + 11568545-11569119,11569179-11569191 28 8.1
>11_04_0355 + 16705281-16706006
Length = 241
Score = 31.9 bits (69), Expect = 0.65
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +3
Query: 720 GGGXGGRXXXXKKKKKKXXAXAXPPXKKXXXXXPPPPP 833
GGG G KK+ K A A P PPPPP
Sbjct: 135 GGGKGASSRRRKKRSGKDKAKAKVPPAASAGQPPPPPP 172
>05_04_0296 -
19943253-19944159,19944239-19945031,19945434-19945496,
19947086-19947182
Length = 619
Score = 31.9 bits (69), Expect = 0.65
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 63 QSGHWLXDNLNTSKINLYSW 122
+SG WL DNLN +K++ Y W
Sbjct: 547 RSGQWLQDNLNRAKLDSYYW 566
>01_01_0316 +
2565704-2566134,2566682-2566845,2566989-2567152,
2567594-2567720,2568347-2568450
Length = 329
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 719 GGGGGGXXXXXXKKKKKXXGXGXAPXQKXXXXXPPPPPP 835
GGGGGG ++ G G PPPPPP
Sbjct: 20 GGGGGGQERPKAPRRHGSHGPGHYGNHHHHRSRPPPPPP 58
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +2
Query: 719 GGGGGGXXXXXXKKKK--KXXGXGXAPXQKXXXXXPPPPPP 835
GGGGGG K G A K PPPPPP
Sbjct: 23 GGGGGGFSPTAAKPPPPPSPRANGTAAAAKPSASPPPPPPP 63
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 776 GXGXAPXQKXXXXXPPPPPP 835
G G AP Q+ PPPPPP
Sbjct: 74 GDGAAPDQEPPPSPPPPPPP 93
>04_04_0844 -
28637393-28638118,28638206-28638283,28638431-28638607,
28639124-28639537
Length = 464
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 719 GGG---GGGXXXXXXKKKKKXXGXGXAPXQKXXXXXPPPPPP 835
GGG G ++KK G G + +K PPPPPP
Sbjct: 13 GGGKKPNSGSGDPKPAREKKRWGFGKSFREKSPAHPPPPPPP 54
>05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634
Length = 322
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 725 GGGGXXXXXXKKKKKXXGXGXAPXQKXXXXXPPPPP 832
GGGG + G P QK PPPPP
Sbjct: 177 GGGGGERSNMMSHGETASAGSPPEQKPAVLPPPPPP 212
>11_01_0333 + 2490132-2491007
Length = 291
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 419 KXNXXPPPPPXFXPP 375
K N PPPPP F PP
Sbjct: 194 KENRPPPPPPSFPPP 208
>05_01_0198 + 1429396-1430640
Length = 414
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +3
Query: 720 GGGXGGRXXXXKKKKKKXXAXAXPPXKKXXXXXPPPPPP 836
GGG GG + + PP +K P PPPP
Sbjct: 178 GGGGGGSLFQFEVFDHRKPEPTSPPWEKYWHCDPLPPPP 216
>12_02_0478 +
19514509-19514940,19515749-19515820,19515954-19515986,
19516169-19516830,19516905-19517045,19518634-19518830,
19518878-19518965,19518987-19519041,19519501-19519571,
19519709-19519763,19519881-19519896,19520286-19520361,
19521202-19521240,19521312-19521333
Length = 652
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 832 GGGGGXXXXXFLXGGXAXAXXFFFFFXXXXXRPPXPPPP 716
GGGGG A A F PP PPPP
Sbjct: 49 GGGGGGGVMTSSSSSAAGATSFTQLLIGNLSAPPPPPPP 87
>09_04_0112 - 14757947-14758972
Length = 341
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +3
Query: 732 GGRXXXXKKKKKKXXAXAXPPXKKXXXXXPPPPPP 836
GG A A PP PPPPPP
Sbjct: 268 GGHSARRSASSSSAAAAAAPPFNPPTSPPPPPPPP 302
>05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922
Length = 618
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 69 GHWLXDNLNTSKINLYSW 122
G WL DNLN +++ Y W
Sbjct: 529 GEWLQDNLNRGRLDRYYW 546
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = -3
Query: 834 GGGGGGXXXXFFXXGA---XPXPXLFFFFFXXXXXXPPPP 724
GGGGGG GA P P F +F PPPP
Sbjct: 121 GGGGGGWQQGGGGGGAYPTPPPPNPFLPYFPFYYYSPPPP 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,621,014
Number of Sequences: 37544
Number of extensions: 411999
Number of successful extensions: 9733
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6671
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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