Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L20
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    32   0.58 
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    32   0.58 
Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical...    29   3.1  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    29   5.4  
Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical...    28   9.5  

>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = +2

Query: 719 GGGGGGXXXXXXKKKKKXXGXGXAPXQKXXXXXPPPPPP 835
           GGGGGG             G   AP        PPPPPP
Sbjct: 274 GGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPPPPP 312


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = +2

Query: 719 GGGGGGXXXXXXKKKKKXXGXGXAPXQKXXXXXPPPPPP 835
           GGGGGG             G   AP        PPPPPP
Sbjct: 274 GGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPPPPP 312


>Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 753 KKKKKKXXAXAXPPXKKXXXXXPPPPPP 836
           K+ K++      PP +K     PPPPPP
Sbjct: 231 KEPKQQDHVVPEPPREKSVPPPPPPPPP 258


>AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 753 KKKKKKXXAXAXPPXKKXXXXXPPPPPP 836
           K+ K++      PP +K     PPPPPP
Sbjct: 231 KEPKQQDHVVPEPPREKSVPPPPPPPPP 258


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 711 LXGGGGXGGRXXXXKKKKKKXXAXAXPPXKKXXXXXPPPPPP 836
           + GGGG GG             A A PP        PPPPPP
Sbjct: 22  MAGGGGGGGGCAPAAP------ACAPPPPPMCGCAPPPPPPP 57


>Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 753 KKKKKKXXAXAXPPXKKXXXXXPPPPPP 836
           ++ K++      PP +K     PPPPPP
Sbjct: 246 EEPKQQDHVVPEPPREKSVPPPPPPPPP 273


>AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 753 KKKKKKXXAXAXPPXKKXXXXXPPPPPP 836
           ++ K++      PP +K     PPPPPP
Sbjct: 246 EEPKQQDHVVPEPPREKSVPPPPPPPPP 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,872,020
Number of Sequences: 27780
Number of extensions: 195962
Number of successful extensions: 3126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2184
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)