Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L20
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70140.1 68414.m08071 formin homology 2 domain-containing pro...    28   6.7  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   6.7  
At4g18570.1 68417.m02749 proline-rich family protein common fami...    28   8.9  

>At1g70140.1 68414.m08071 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 760

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 789 PPXKKXXXXXPPPPPP 836
           PP KK     PPPPPP
Sbjct: 258 PPIKKGSSPSPPPPPP 273


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 789 PPXKKXXXXXPPPPPP 836
           PP KK     PPPPPP
Sbjct: 399 PPPKKGPAAPPPPPPP 414


>At4g18570.1 68417.m02749 proline-rich family protein common family
           members: At3g25690, At4g04980, At5g61090 [Arabidopsis
           thaliana]
          Length = 642

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 783 AXPPXKKXXXXXPPPPPP 836
           A PP +K     PPPPPP
Sbjct: 301 ADPPPQKSIPPPPPPPPP 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,436,623
Number of Sequences: 28952
Number of extensions: 203034
Number of successful extensions: 4616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3397
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)