Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L19
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...   120   3e-28
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    56   8e-09
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    27   2.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.5  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.4  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score =  120 bits (289), Expect = 3e-28
 Identities = 59/132 (44%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
 Frame = +1

Query: 43  SRDDSMPLAHVAIAVEGAGWTDADNIPLMVANTLIGAWDRSQGGGSNNASYLARAASVGN 222
           +RDD  P A++AIAVEG  W   D    +V   +IG WDR+ G   + +S L+       
Sbjct: 254 ARDDDSPTANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQ 313

Query: 223 LCHSFQSFNTCYKDTGLWGIYFVAESL-QLDDMLYNIXKEWMKLCTSVTEGEVERAKNLL 399
           L +SF SF+T Y DTGLWGIY V E+L ++DD+++   + W +L T  T  EVERAK  L
Sbjct: 314 LANSFMSFSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARL-TVATRAEVERAKAQL 372

Query: 400 KTNMLLQLDGTT 435
           + ++LL LD TT
Sbjct: 373 RASLLLSLDSTT 384



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +2

Query: 401 RPTCFCNLMEPLLVCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFD 568
           R +   +L     + EDIGRQ+L   RR+   E+D RI  +T  +V  V  + ++D
Sbjct: 373 RASLLLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMIWD 428



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 579 AVAAVGPTEGLPDYTRI 629
           AV+AVG  EGL DY RI
Sbjct: 432 AVSAVGSIEGLLDYNRI 448


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
 Frame = +1

Query: 70  HVAIAVEGAGWTDADNIPLMVANTLIGAWDRSQGGGSNNASYLARAASVGNL---CHSFQ 240
           HV IA+EG   TD D   L     L+G       GG     Y     +V N      +  
Sbjct: 288 HVVIAMEGLPVTDPDIYALACLQFLLGGGGSFSAGGPGKGMYSRLYLNVLNQYPWVETCM 347

Query: 241 SFNTCYKDTGLWGIYFVAESLQLDDMLYN----IXKEWMKLCTSVTEGEVERAKNLLKTN 408
           +FN  Y D+GL+G++       LDD  +     I +E      SVT  E ERAKN LK++
Sbjct: 348 AFNHSYTDSGLFGMFVTI----LDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSS 403

Query: 409 MLLQLD 426
           +L+ L+
Sbjct: 404 LLMNLE 409


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 455 GRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFDP 571
           G  ML Y+  +  HE+      + V +  D C KYL  P
Sbjct: 183 GHTMLVYSNSLLNHEIIVTTSDIAVGDYLDKCAKYLGIP 221


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 428 PSSCKSMLVLSKFLARSTSPSVT-DVQSFIHSX-WMLYNISSSCRLSAT 288
           P SC     L+ F       SV+ D  SF H   WML N+ S CR+ A+
Sbjct: 835 PLSCIPSSSLTNFTQPLVPFSVSRDPISFYHPLHWMLSNLFSYCRVDAS 883


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -2

Query: 431 VPSSCKSMLVLSKFLARSTSPSVTDVQSFIHSXWMLYNISSSCRLSATK*MPHRPVS 261
           +  SCK++ + S+  + + SP  T +++++ S W L  + SS + + T   P  P S
Sbjct: 558 INDSCKAIDIHSEKPSFADSPRKTSLRNYLSSSWRLKFMRSSYQNNETD--PLNPTS 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,498
Number of Sequences: 5004
Number of extensions: 48549
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)