Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_L19
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 128 6e-30
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395... 119 3e-27
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 46 3e-05
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 42 6e-04
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 39 0.006
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 37 0.018
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 128 bits (309), Expect = 6e-30
Identities = 60/129 (46%), Positives = 87/129 (67%)
Frame = +1
Query: 49 DDSMPLAHVAIAVEGAGWTDADNIPLMVANTLIGAWDRSQGGGSNNASYLARAASVGNLC 228
DD MPLA A+A GA W D D+I LMV +++G+W++S GGG + S L + ++ ++
Sbjct: 332 DDDMPLAQFAVAFNGASWIDPDSIALMVMQSMLGSWNKSAGGGKHMGSELVQRVAINDIA 391
Query: 229 HSFQSFNTCYKDTGLWGIYFVAESLQLDDMLYNIXKEWMKLCTSVTEGEVERAKNLLKTN 408
S +FNT YKDTGL+G+Y VA+ LDD+ + I +E KL VTE +V RA+N LK++
Sbjct: 392 ESIMAFNTNYKDTGLFGVYAVAKPDCLDDLAFAIMQEISKLSYRVTEEDVIRARNQLKSS 451
Query: 409 MLLQLDGTT 435
+ L LDG+T
Sbjct: 452 IQLHLDGST 460
Score = 51.6 bits (118), Expect = 8e-07
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +2
Query: 440 VCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFD 568
V EDIGRQ+L Y RRIPI EL ARI++V V+ V +++FD
Sbjct: 462 VVEDIGRQLLIYGRRIPIPELFARIDAVDASTVKRVANRFIFD 504
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 579 AVAAVGPTEGLPDY 620
A+AA+GP +GLPDY
Sbjct: 508 AIAAMGPIQGLPDY 521
>01_06_0459 +
29538025-29538579,29539190-29539354,29539448-29539585,
29539685-29539836,29539949-29540057,29540281-29540379,
29541051-29541116,29541208-29541315,29541428-29541553
Length = 505
Score = 119 bits (287), Expect = 3e-27
Identities = 59/126 (46%), Positives = 84/126 (66%)
Frame = +1
Query: 58 MPLAHVAIAVEGAGWTDADNIPLMVANTLIGAWDRSQGGGSNNASYLARAASVGNLCHSF 237
MPL H AIA +G+ W + +IPLMV +++G W+RS G G+ + S LAR S GNL S
Sbjct: 294 MPLTHFAIAFKGSSWANPSSIPLMVIQSILGTWNRSIGVGNCSGSALARGISNGNLAESM 353
Query: 238 QSFNTCYKDTGLWGIYFVAESLQLDDMLYNIXKEWMKLCTSVTEGEVERAKNLLKTNMLL 417
+FNT Y+DTGL+GI +A+ L D+ I +E+ +L V+E EV RA+N LK+ +LL
Sbjct: 354 IAFNTNYRDTGLFGICTIAQPDSLYDLSQLIMQEFRRLAFEVSETEVARARNQLKSALLL 413
Query: 418 QLDGTT 435
+DG+T
Sbjct: 414 HIDGST 419
Score = 35.5 bits (78), Expect = 0.054
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 440 VCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFD 568
V E+ GRQML Y R +P EL ARI++V V + ++ D
Sbjct: 421 VSENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIID 463
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 46.4 bits (105), Expect = 3e-05
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Frame = +1
Query: 46 RDDSMPLAHVAIAVE-GAGWTDADNIPLM-VANTLIGAWDR-SQGG---GSNNASYLARA 207
R DS + HVA+A E GW + + +M V TL+G S GG G ++ YL R
Sbjct: 288 RADS-EMTHVALAFEVPGGWLEERDATIMTVVQTLMGGGGSFSSGGPGKGMHSRLYL-RV 345
Query: 208 ASVGNLCHSFQSFNTCYKDTGLWGIYFVAESLQLDDMLYNIXKEWMKLCT--SVTEGEVE 381
+ + SF F+ + +GL+GIY S + + KE + + T VT+ E+
Sbjct: 346 LTKYHTVESFSVFSNAFDRSGLFGIYLTTPSDFVAKAVDIATKELIAIATPGQVTDIELA 405
Query: 382 RAKNLLKTNMLLQLD 426
RAKN + +L+ L+
Sbjct: 406 RAKNSTISAVLMNLE 420
Score = 34.7 bits (76), Expect = 0.094
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 419 NLMEPLLVCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFDPLSSCS 586
NL ++V EDIGRQ+L Y R P+ ++ +T+ ++ K L P + S
Sbjct: 418 NLESRVIVAEDIGRQILTYGCRKPVDHFLQCMDEMTLDDITAFAKKMLSSPPTMAS 473
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 41.9 bits (94), Expect = 6e-04
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Frame = +1
Query: 70 HVAIAVE-GAGWTDADN-IPLMVANTLIGAWDRSQGGGSNNASYLARAASVGNLCH---S 234
H+A+A E GW + I + V L+G GG + + N H S
Sbjct: 301 HIALAFEVPGGWFEEKTAIIVTVLQMLMGGGGSFSAGGPGKGMHSRLYLRILNNYHQIES 360
Query: 235 FQSFNTCYKDTGLWGIYFVAESLQLDDMLYNIXKEWMKLCT--SVTEGEVERAKNLLKTN 408
F +FN+ Y +GL+GI+ + E +++ T VT+ +++RAK K+
Sbjct: 361 FSAFNSIYNHSGLFGIHATTSPNFASKAVDLAAGELLEVATPGKVTQEQLDRAKQATKSA 420
Query: 409 MLLQLD 426
+L+ L+
Sbjct: 421 VLMNLE 426
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 419 NLMEPLLVCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFDPLSSCS 586
NL ++ EDIGRQ+L Y R PI +E++T+ ++ K + PL+ S
Sbjct: 424 NLESRVVASEDIGRQILTYGERKPIEHFLKDLEAITLNDISSTAKKIISSPLTLAS 479
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 38.7 bits (86), Expect = 0.006
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 398 SRPTCFCNLMEPLLVCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFDPLS 577
++ + +L ++ EDIGRQ+L Y R PI +E +T+ ++ K + PL+
Sbjct: 469 TKSSVLMDLESRIVASEDIGRQVLTYGERKPIEYFLKTVEEITLNDISSTAKKIISSPLT 528
Query: 578 SCS 586
S
Sbjct: 529 LAS 531
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 37.1 bits (82), Expect = 0.018
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 419 NLMEPLLVCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFDPLSSCS 586
NL ED+GRQ+L + R P+ L ++ VT+ ++ + K + PL+ S
Sbjct: 430 NLESKASATEDMGRQILAFGERKPVEHLLKAVDGVTLKDITALAEKIISSPLTMAS 485
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,783
Number of Sequences: 37544
Number of extensions: 347728
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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