Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L19
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)             188   4e-48
SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13)       43   4e-04
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       42   6e-04
SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         42   6e-04
SB_9700| Best HMM Match : Keratin_B2 (HMM E-Value=0.036)               30   2.7  
SB_42761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score =  188 bits (459), Expect = 4e-48
 Identities = 82/131 (62%), Positives = 101/131 (77%)
 Frame = +1

Query: 46  RDDSMPLAHVAIAVEGAGWTDADNIPLMVANTLIGAWDRSQGGGSNNASYLARAASVGNL 225
           RDD MPLAHVA++VEG GWT  D   LMVAN L+G+WDRS   G N  S LA+  +  NL
Sbjct: 168 RDDDMPLAHVAMSVEGCGWTHPDYFALMVANMLVGSWDRSFSAGKNIGSKLAQQIAQNNL 227

Query: 226 CHSFQSFNTCYKDTGLWGIYFVAESLQLDDMLYNIXKEWMKLCTSVTEGEVERAKNLLKT 405
            H+F SFNTCY DTGLWGIYFV + +++DD +Y I  EWM++CTS+T+ EV RAKNLLKT
Sbjct: 228 AHNFMSFNTCYTDTGLWGIYFVCDKMKIDDTIYCIQHEWMRICTSITDHEVARAKNLLKT 287

Query: 406 NMLLQLDGTTP 438
           N+L+QLDG+TP
Sbjct: 288 NILMQLDGSTP 298



 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 25/43 (58%), Positives = 32/43 (74%)
 Frame = +2

Query: 440 VCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFD 568
           +CEDIGRQML Y RRIP+ E+D RIE +    V+DV  KY++D
Sbjct: 299 ICEDIGRQMLTYGRRIPLPEIDMRIEMIDAKTVKDVATKYIYD 341


>SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13)
          Length = 209

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +1

Query: 64  LAHVAIAVEGAGWTDADNIPLMVANTLIGAWDRSQGGGSNNASYLARAASVGNLCH---S 234
           LAHV+I +E   + D D     V N L+G       GG     Y     +V N  H   S
Sbjct: 18  LAHVSIGLESTSYDDPDFFAFTVLNMLMGGGGSFSAGGPGKGMYSRLYLNVLNKYHWIYS 77

Query: 235 FQSFNTCYKDTGLWGIYFVAESLQLD 312
             ++N  Y D+G++ I+  A   Q++
Sbjct: 78  ATAYNHSYSDSGMFCIHASAHPTQVE 103



 Score = 31.5 bits (68), Expect = 0.89
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +2

Query: 419 NLMEPLLVCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYL 562
           NL   ++V EDIGRQ+L    R    EL   IE+VT+ ++  V  + L
Sbjct: 118 NLESRVIVFEDIGRQVLGLGERRSAGELYECIENVTMDDILRVSSRML 165


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +1

Query: 64  LAHVAIAVEGAGWTDADNIPLMVANTLIGAWDRSQGGGSNNASYLARAASVGNLCH---S 234
           LAHV+I +E   + D D     V N L+G       GG     Y     +V N  H   S
Sbjct: 721 LAHVSIGLESTSYDDPDFFAFTVLNMLMGGGGSFSAGGPGKGMYSRLYLNVLNKYHWIYS 780

Query: 235 FQSFNTCYKDTGLWGIYFVAESLQL 309
             ++N  Y D+G++ I+  A   Q+
Sbjct: 781 ATAYNHSYSDSGMFCIHASAHPTQV 805


>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +1

Query: 205 AASVGNLCHSFQSFNTCYKDTGLWGIYFVAESLQLDDMLYNIXKEWMKLCT-SVTEGEVE 381
           A+ V     +  + N  Y D+GL+G YF+A   +++ ++     ++ K+    V++ E+ 
Sbjct: 281 ASEVAQGPFAVSALNMSYSDSGLFGCYFIASPAEIEKVMKASLGQFAKVAKGEVSDDELL 340

Query: 382 RAKNLLKTNMLL 417
           RAKN LK ++L+
Sbjct: 341 RAKNQLKASLLM 352


>SB_9700| Best HMM Match : Keratin_B2 (HMM E-Value=0.036)
          Length = 276

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = +2

Query: 470 CYNRRIPIHELDARIESVTVXNVRDVCYKYLFDPLSSCSC 589
           CY   +P+H      + +   +    CY+Y+   L++ +C
Sbjct: 36  CYQYMLPVHATSTCYQHMLPVHATSTCYQYMLPALATSTC 75



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +2

Query: 470 CYNRRIPIHELDARIESVTVXNVRDVCYKYLFDPLSSCSC 589
           CY   +P+H      + +   N    CY+Y+    ++ +C
Sbjct: 166 CYQHMLPVHATSTCYQYMLPVNATSTCYQYMLPVHATSTC 205


>SB_42761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -3

Query: 616 SGRPSVGPTAATAGQRVK*VFVANITYIXYSNRFNTSIKFMDGDASVVAEH 464
           SGR  +GP A     R K +  A+     YS  FN    F      ++AEH
Sbjct: 170 SGREGLGPKAQNHNGRTKAIITASKRIAVYSGLFNALFTFF---KDLMAEH 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,601,576
Number of Sequences: 59808
Number of extensions: 385137
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)