Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L19
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.2  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 647 PVHSTXNPSVVRKTFSRSNGSYSWTTGQI 561
           P+ S    S VR+     N S +WT GQ+
Sbjct: 499 PLMSLITSSEVRQPGKAPNYSVNWTIGQL 527


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 487 DASVVAEHLTTNIFTDQEW 431
           D ++  + +TTN++ +QEW
Sbjct: 59  DVNLKNQIMTTNVWVEQEW 77


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -3

Query: 487 DASVVAEHLTTNIFTDQEWF 428
           D ++  + +TTN++ +Q W+
Sbjct: 67  DVNLKNQIMTTNLWVEQSWY 86


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -3

Query: 487 DASVVAEHLTTNIFTDQEWF 428
           D ++  + +TTN++ +Q W+
Sbjct: 67  DVNLKNQIMTTNLWVEQSWY 86


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -3

Query: 487 DASVVAEHLTTNIFTDQEWF 428
           D ++  + +TTN++ +Q W+
Sbjct: 63  DVNLKNQIMTTNLWVEQSWY 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,658
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)