Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L18
         (913 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)                     39   0.006
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          28   9.1  

>SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)
          Length = 522

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +2

Query: 218 ACVLSNGLTTNFKFVEVSVADSPDLTEPPYYLKSPGLT-----GDAKLVEIGGPPYLVPQ 382
           A  +S+  T+N K +     +  DL  PP    + GL      G  ++V++GGP YL+P 
Sbjct: 256 AASMSSRSTSNEKELSKFPVEDVDLYVPPLDELAKGLILLGFGGKPRIVDVGGPAYLLPL 315

Query: 383 VXRDKIYDLAQAA 421
              +KIYD+   A
Sbjct: 316 PQLNKIYDMNDVA 328


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 571  PT*EPPQXASNPATXPANXLAQTQXKPXTXGL--LPRKTXLLGPEXGNPP 714
            PT EPP+  S P T P     +   +P T  +  +PR+   L      PP
Sbjct: 1133 PTTEPPRTTSEPTTEPLRTTPEPTTEPTTEHVTTVPRRRGCLYEGKWYPP 1182


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 623  TXXPKPXXNPGPAVCSREKLPCLD 694
            T  PKP  +P P +C   K  C D
Sbjct: 2984 TVAPKPSPSPTPGICGAGKFQCTD 3007


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,022,559
Number of Sequences: 59808
Number of extensions: 366958
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)