Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L18
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   5.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.9  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 81  NERSPILQQSDSVKLYKRTYKNDVNRLH*SNNQGE 185
           N R P+    + +  Y+RT ++    L   N QG+
Sbjct: 120 NSRYPLRPPQEVISHYRRTRRDRYTNLGLVNEQGQ 154


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 481 TGHGPAPAPARKAGSR 434
           TG  P P PA+KA  R
Sbjct: 382 TGPPPGPTPAQKARMR 397


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 53  SYRSRWDAGQ*EVTNTST 106
           ++R RW++ Q EVT T T
Sbjct: 87  AHRIRWESVQKEVTVTGT 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,774
Number of Sequences: 438
Number of extensions: 4469
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)