Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L18
         (913 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof...    31   0.80 
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t...    30   1.9  
At5g47480.1 68418.m05863 expressed protein                             28   9.9  

>At3g25240.1 68416.m03153 hypothetical protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 281

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +1

Query: 37  DLAASFVPQSVGRRSMRGHQYFNSRTV*SYTNARTRMT-SIDYTKVTIKEKELYTPPXGR 213
           D A+ F      R   RG Q   +  V +  N RT +  S D  K ++K + L  PP  R
Sbjct: 172 DFASEFEIARPTREYTRGLQLLPNVFVGNEENLRTIVRESCDAAKRSMKSRGLSLPPWRR 231

Query: 214 SSLCIVEWFNNELQVCGSVSG 276
           SS    +WF    +  GS  G
Sbjct: 232 SSYLQHKWFGPYKRKVGSSLG 252


>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
           carteri f. nagariensis GP|6523547; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 375

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 30/107 (28%), Positives = 31/107 (28%), Gaps = 3/107 (2%)
 Frame = +1

Query: 532 YC*PXYXXTVXCPPT*EPPQXASNPATXPA---NXLAQTQXKPXTXGLLPRKTXLLGPEX 702
           YC P       C P   PPQ    P T P       A  Q  P      P       P  
Sbjct: 29  YCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPAL 88

Query: 703 GNPPXKGLI*XXGPXKKTXXGPTXQLFXSRSPPRXTXLXXPPPPXXT 843
              P K L     P + T   P         PP  T    PPPP  T
Sbjct: 89  ---PPKPLPPPLSPPQTTP--PPPPAITPPPPPAITPPLSPPPPAIT 130


>At5g47480.1 68418.m05863 expressed protein
          Length = 1350

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +1

Query: 40  LAASFVPQSVGRRS-MRGHQYFNSRTV*---SYTN-ARTRMTSIDYTKVTIKEKELYTPP 204
           +A  F P ++G +S +  H    S T     S++N    R  S+D+ + + +  +L++P 
Sbjct: 452 VAEQFKPNTIGAQSFIPQHMNVASATQNGPLSFSNDLYNRQQSVDHAQKSFQNNQLFSPS 511

Query: 205 XGRSS 219
            GRSS
Sbjct: 512 VGRSS 516


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,640,399
Number of Sequences: 28952
Number of extensions: 264819
Number of successful extensions: 751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)