Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_L17
(887 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 32 0.71
SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29) 32 0.71
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 31 1.2
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 31 1.6
SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6) 31 1.6
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 31 1.6
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 30 2.2
SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9) 30 2.9
SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22) 30 2.9
SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024) 29 3.8
SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3) 29 3.8
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 29 5.0
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033) 29 6.6
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 32.3 bits (70), Expect = 0.54
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 168 TLTQETATNLLTTART--SLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLV 338
T+T TN TT T + I+ TTT+ T T ++TT+ T T +T+++ +++
Sbjct: 8 TVTTTIITNATTTIITLSTTIITTTTTITTTTTTITTTITPTITTTTTIITTTITTTII 66
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 31.9 bits (69), Expect = 0.71
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +3
Query: 129 LWPTLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKAD 308
L+PT P R + T T T L T RT LP T + T + + T TLP D
Sbjct: 139 LYPTQSAPYRLYPTQTVRTIQTLPNTVRTIQTLPSTDSAHRT-DHPTQTESTVQTLPSTD 197
>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
Length = 447
Score = 31.9 bits (69), Expect = 0.71
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 167 NADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 337
NA NG P + P+ PP Y P NG +P+ Y+ P G+P + PF G
Sbjct: 309 NAPPFNGQPPYNTPPFNGQPPY-YTPPFNG-QPL----YHTPPFNGQPPYNTPPFNG 359
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +2
Query: 185 GYEPIDNRPYIVNPPKDYN-PNGNGYEPID----NG--AYYVDPPQGRPYFKPTPFPG 337
G P + P+ PP YN P NG P + NG YY P G+P + PF G
Sbjct: 293 GQPPYNAPPFTGQPP--YNAPPFNGQPPYNTPPFNGQPPYYTPPFNGQPLYHTPPFNG 348
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 31.5 bits (68), Expect = 0.94
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 168 TLTQETATNLLTTARTSLILPKTTTL-METATNLSTTVHITWTLPKADLTSSLPLSLVLA 344
T + T +L TTA + P+TTT + T +TT + T P+A T+SL + LA
Sbjct: 561 TAPEATTASLATTAPEATTAPETTTALLVTTAPETTTASLVTTAPEA-TTASLATTASLA 619
Query: 345 VGSKE 359
+ E
Sbjct: 620 TTAPE 624
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 168 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSL 323
T + T +L+TTA + P+TTT E T TT T T+SL
Sbjct: 134 TAPEATTASLVTTAPEATTAPETTTAPEATTAPETTTASLVTTAPETTTASL 185
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 168 TLTQETATNLLTTARTSLILPKTTTL-METATNLSTTVHITWTLPKADLTSSLPLSLVLA 344
T + T +L TTA + P+TTT + T +TT + T P+A T+SL + A
Sbjct: 519 TAPETTTASLATTAPETTTAPETTTASLATTAPETTTASLVTTAPEA-TTASLATTAPEA 577
Query: 345 VGSKEYLRKLI 377
+ E L+
Sbjct: 578 TTAPETTTALL 588
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 162 WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWT 293
+ T+ T T TT T+ I TTT T TN +TTV+ T T
Sbjct: 538 YTTIVTITITTNYTTTVTTTITNYTTTFTITITNYTTTVNTTIT 581
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 201 TTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSS 320
T A + + PKTTT +ET TTV + T P + TS+
Sbjct: 229 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 267
>SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)
Length = 127
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +3
Query: 162 WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHIT 287
W T T T T TT T+ TTT +T T +TT IT
Sbjct: 53 WTTTTTSTITT--TTTTTTTTKTTTTTTTKTTTTTATTTEIT 92
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +2
Query: 188 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY--YVDPPQGRPYFKPTPFP 334
Y P N PY P Y P N Y P N Y +PP P + P P P
Sbjct: 116 YPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNP 167
Score = 28.3 bits (60), Expect = 8.8
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +2
Query: 188 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY----YVDPPQGRPYFKPTPFP 334
Y P N PY P Y P+ N Y P N Y Y PP P P P P
Sbjct: 124 YPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPP 177
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 201 TTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSS 320
T A + + PKTTT +ET TTV + T P + TS+
Sbjct: 2291 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 2329
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 174 TQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSS 320
++ T T A + + PKTTT +ET TTV + T P + TS+
Sbjct: 767 SETTVAPETTDAPATTLAPKTTTALETTVAAKTTV-VPETTPALETTSA 814
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 144 KTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTT 275
K P+ KT TAT T A + + P+TT + ET L TT
Sbjct: 1682 KAPVDQLKTKQPTTATAKTTAAPETTVAPETTVVPETTPALETT 1725
>SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9)
Length = 678
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 TATNLLTTART-SLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 347
T +L+T T L++ T L+ T + V IT TLP +T+ LPL ++ +
Sbjct: 278 TILHLVTITTTLPLVVITTILLLVVITTILPLVAITTTLPLVAITTILPLVVITTI 333
>SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 168 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTT 275
T+T TAT TT T+ TTT T T +TT
Sbjct: 28 TITTATATTTTTTTTTTTTTTTTTTTTTTTTTTTTT 63
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +3
Query: 168 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 317
T T T T TTA + TTT T T +TT T T T+
Sbjct: 14 TTTTTTTTTAATTATITTATATTTTTTTTTTTTTTTTTTTTTTTTTTTTT 63
>SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22)
Length = 266
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +3
Query: 189 TNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 347
TN++TT+ T++I T T+ T T ++ T+ IT T+ +T ++ +++ + +
Sbjct: 168 TNIITTSNTNIITTTTITITITIT-ITITITITITI-TITITITITITITITI 218
>SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +3
Query: 141 LKTPLR*WKTLTQETAT-NLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 317
L TP+ T+T T T +TT T++ + TTT+ T T TT T T D
Sbjct: 12 LGTPITTITTITVTTITVTTITTTITTITITTTTTITITITITITTTITTITTTTGDPLE 71
Query: 318 SL--PLSLVLAV 347
S SL LAV
Sbjct: 72 STCRHASLALAV 83
>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 165 KTLTQETATNLLTTARTSLILPKTTTLMETA-TNLSTTVHITWTLPKADLTSSLPLSLVL 341
+T +TAT+ T TS +L +T L+ T T+ +T+ H+T LTS+ ++ V+
Sbjct: 432 RTTVTDTATS--TAVVTSTVLVASTRLLSTVKTHTATSTHVTTATSTDTLTSTAIVTSVM 489
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +3
Query: 171 LTQETATNLLTTARTSLILPKTTTLMETATNLSTTVH---ITWTLPKADLTSSLPL 329
+T T ++TT T+ I+ T T T T ++TTV IT T+ +T++ P+
Sbjct: 1080 ITTTITTTIITTTITTTIITTTITTTITTTIITTTVTTTIITTTITTTIITTTDPI 1135
>SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)
Length = 249
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 138 TLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 317
T T + T T +T + TT T+ I TTT+ TA +STT T T +T+
Sbjct: 94 TTTTTITTTTTTTTTISTTISTTTTTTTISTTTTTI--TAVIISTTTTTTSTANTTTITA 151
Query: 318 SL 323
++
Sbjct: 152 TI 153
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 168 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLA 344
T T TA +++T T+ TTT+ T T +TT+ IT T+ T + ++ ++
Sbjct: 125 TTTTITAV-IISTTTTTTSTANTTTITATITTTTTTITITATITTITTTITATITTTIS 182
>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
Length = 1165
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 183 TATNLLTTARTSLILPKTTTLMETA--TNLSTTVHITWTLPKADLTSSLPLSLVLAV 347
T T L T L L TTL+ T + V IT TLP +T++LPL ++ +
Sbjct: 541 TTTLPLVVITTILPLVTITTLLPLVVITTILPLVVITTTLPLVAITTTLPLVIITTI 597
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 165 KTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVH---ITWTLPKADLTSSLPL 329
+TL + + +L L TT++ T ++TT+H IT TLP +T+ LPL
Sbjct: 499 QTLLNHASKKAILAITNTLPLVVITTILHLVT-ITTTLHLVTITTTLPLVVITTILPL 555
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 168 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADL 311
T T T TTA T+ TTT T T +TT+ I W D+
Sbjct: 526 TATATTTATATTTATTAATATTTTTTTTTNTTTNTTI-IIWIAAVTDV 572
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.1 bits (62), Expect = 5.0
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +3
Query: 147 TPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTT-VHITWTLPK---ADLT 314
TPL + T T A + LPKTT ET T TT T TLPK A T
Sbjct: 2968 TPLPKTTAAPETTPLPKTTAAPETTTLPKTTAAPETTTLPKTTAAPETTTLPKTTAAPET 3027
Query: 315 SSLP 326
++LP
Sbjct: 3028 TTLP 3031
Score = 28.3 bits (60), Expect = 8.8
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 168 TLTQETATNLLTTART-SLILPKTTTLMETATNLSTT-VHITWTLPK 302
T ET T TTA + LPKTT ET T TT T TLPK
Sbjct: 2986 TAAPETTTLPKTTAAPETTTLPKTTAAPETTTLPKTTAAPETTTLPK 3032
>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 132 WPTLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADL 311
+ T KT KT T A +TT T+ TTT T T +TT K
Sbjct: 21 YATTKTTAATIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTKTIT 80
Query: 312 TSSLPLSLVLA 344
+++ ++ +A
Sbjct: 81 ITTVTITTAVA 91
>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -2
Query: 313 VRSALGRVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVS*VSV 167
VR + R VV R S+RVV+ + VR V+ R+VA++ V V
Sbjct: 772 VRVVMRRYVTSVRVVMRRYVASVRVVMPRYVASVRVVMRRYVAIASVRV 820
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -2
Query: 313 VRSALGR-VHVICTVVDRFVAV-SIRVVVFGRINDVRAVVNRFVAVS*VSVFHYLNGV 146
VR + R V + V+ R+VA+ S+RVV+ + VR V+ R+VA V + Y+ V
Sbjct: 794 VRVVMPRYVASVRVVMRRYVAIASVRVVMRRYVASVRVVMRRYVASVRVVMRRYVTSV 851
>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
Length = 382
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 132 WPTLKTPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADL 311
+ T KT KT T A +TT T+ TTT T T +TT K
Sbjct: 143 YATTKTTAATIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTKTIT 202
Query: 312 TSSLPLSLVLA 344
+++ ++ +A
Sbjct: 203 ITTVTITTAVA 213
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 186 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 317
AT +TT ++ P TT TAT +TT T T P A T+
Sbjct: 96 ATATITTYTATVTAPNATTTTPTATTTTTTT-TTTTTPYATTTT 138
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = +3
Query: 168 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTS 317
T T TAT TT T+ TTT T T TT + T T P A T+
Sbjct: 113 TTTTPTATTTTTTTTTTTTPYATTTTPNTTT---TTPNTTTTSPNATTTT 159
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 168 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLS 332
++ + TATN TA +PKTTT ET TTV T D S+ +S
Sbjct: 352 SVPETTATN---TAPDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTIS 403
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 168 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSLVLAV 347
T TQ+T T + +T + + TTTL T +TT T TLP ++ L+
Sbjct: 220 TTTQQTTTTIPSTKQPTTTQQTTTTLPST-KQPTTTQQTTTTLPSTKQPTTPQLTTTTFP 278
Query: 348 GSKE 359
+K+
Sbjct: 279 STKQ 282
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 168 TLTQETATNLLTTART-SLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLP 326
T ET TTA + LPKTT + ET TT T + DLT LP
Sbjct: 225 TAAPETIAKPETTAPPETTALPKTTAVPETTAAPETTAKPETTDLRVDLTIFLP 278
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,098,270
Number of Sequences: 59808
Number of extensions: 411619
Number of successful extensions: 1546
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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