Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L17
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23720.1 68414.m02994 proline-rich extensin-like family prote...    29   5.4  
At5g44780.1 68418.m05488 expressed protein low similarity to SP|...    28   7.2  
At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger) fa...    28   7.2  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    28   7.2  
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    28   7.2  
At1g76010.1 68414.m08825 expressed protein                             28   7.2  
At1g72110.1 68414.m08335 expressed protein                             28   7.2  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    28   9.5  

>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 895

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 209 PYIVN--PPKDYNPNGNG-YEPIDNGAYYVDPPQGRPYFKPTPFP 334
           PY+ N  PP  Y+P+    Y+       Y  PP   PY+ PTP P
Sbjct: 612 PYVYNSPPPPYYSPSPKPTYKSPPPPYVYSSPPP--PYYSPTPKP 654


>At5g44780.1 68418.m05488 expressed protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 723

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 233 DYNP-NGNGYEPIDNGAYYVDPPQGR 307
           +Y+P NG  Y P   G +Y  PPQG+
Sbjct: 530 NYSPQNGGHYGPAQFGQWYPGPPQGQ 555


>At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 257

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 655 CNHYKLQ*NXLTTTI--AFILCFRFXGEVWXVFSA 753
           C  YK++ N  TTT+    +LC R   E W + S+
Sbjct: 200 CKEYKMKGNKATTTVWLYVLLCMRNPMEAWRLLSS 234


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 167 NADSGNGYEPIDNRP-YIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 328
           NA    G  P+ + P + + PP ++     G  P+  G  Y  PPQ  P    TP
Sbjct: 257 NAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGGFPYGAPPQQLPSAPGTP 311


>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
           (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
           (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
           {Arabidopsis thaliana}; contains Pfam profiles: PF00614
           phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 233 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 334
           DY P+   Y+P  N   Y  PP    Y +P  +P
Sbjct: 101 DYQPSPYPYQPQGNFGAYGPPPPHYSYQEPAQYP 134


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +2

Query: 173 DSGNGYE-PIDNRPYIVNPPKDYNPNGNG-YE-PIDNGAYYVDPPQG-RPYFKPTPFPGA 340
           D G GY+ P ++R Y      D  P G G Y+ P   G Y  D PQG R Y  P   P  
Sbjct: 220 DGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRGGY--DGPQGRRGYDGP---PQG 274

Query: 341 RGG 349
           RGG
Sbjct: 275 RGG 277


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 422 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 327
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 224 PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 334
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,072
Number of Sequences: 28952
Number of extensions: 303464
Number of successful extensions: 703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)