Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L16
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    29   0.86 
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    28   2.0  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   4.6  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   4.6  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   6.0  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   8.0  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    26   8.0  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   8.0  

>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = -1

Query: 284 FLLSLFRIKRSLQRDTNCVTKISYPDNDYRQPLSLRK---IKTHHKLISVQ*INKCTLLI 114
           FLL  FR+K   +   +CV     P    R  L+LR        HK      ++   +L+
Sbjct: 28  FLLERFRVKEKSRTFKDCVNVYQCPSKGERVYLALRHWFIFLATHKAQMTLILSPLVMLV 87

Query: 113 EIHFTG 96
            I FTG
Sbjct: 88  TIPFTG 93


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 375 RIGPKLLFNTGILTTGTCAILFGLLDRVXGHVPFITLS 488
           RI  + +   G  +TG  AI  G+   +    PF+TLS
Sbjct: 62  RIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLS 99


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 222 FCNAICVALQAPFYPKEAEKKGCTATEY 305
           FC  +C  L  PF+ K   K+G + T Y
Sbjct: 18  FC-CVCTILTMPFFKKPYRKRGISRTPY 44


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 541  EAVRKAAFPIASTILITKLSVIKGTWPXTRSSK 443
            +AVR + F I+    + KL ++ G+W   R SK
Sbjct: 933  QAVRSSDFSISQFCYLKKLLLVHGSWCYQRLSK 965


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = -2

Query: 601  SIDANIVATLLGNSXAIIAKEAVRKAAFPIASTILITKLSVIKGTWPXTRSSK 443
            +ID N+V  L     A++ + + +  A PI++ +     S++  TW    ++K
Sbjct: 1237 TIDVNVVQELSAERAALVFRISQQTLAIPISNEVKEHLQSILLLTWKAITTTK 1289


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/38 (26%), Positives = 25/38 (65%)
 Frame = -3

Query: 294  PCTLSSQPLSDKKELAARHKLRYKNQLSR*RLSSAIVA 181
            P T++++PL+D+K +   + ++ K  ++R  + S ++A
Sbjct: 1543 PSTITAKPLNDEKAINNENSVKQKTVITRKDVVSKVLA 1580


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/79 (21%), Positives = 34/79 (43%)
 Frame = -1

Query: 653 QRSTQSRTNDEAQTEKRFYRRKHSSNVVREFLXYYSKRSSQEGGVSHRLHDSYYKAERYK 474
           Q+  + R   + + EKR    + S     + L     +SSQ+  + H L     ++  +K
Sbjct: 641 QKEEEERIAQQKREEKRRLAYEESLKRHAKKLHEKKTKSSQDATIDHHLTSHSPESIAFK 700

Query: 473 GNMAXYSI*QTEQYSTRPG 417
             +A +   +T +Y  + G
Sbjct: 701 AVLAKFFANKTARYQEKLG 719


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 475 KGTWPXTRSSKPNNIAHVPVVNMPVLNSSFGPILLRWAP 359
           KG     ++  P N+    +++ P L   F   LL W+P
Sbjct: 163 KGKLNEKKNRSPENLLPFRILDAPELRDDFYTSLLSWSP 201


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 356 DGAHNEHH*LEDPEHQSIFCGRAPFLLSLFRIK 258
           DG HNEH  L +   Q +FC     +L + +++
Sbjct: 301 DG-HNEHRELRNARGQRLFCSEYGTILEIIQVE 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,515
Number of Sequences: 5004
Number of extensions: 62602
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)