Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L16
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0376 + 8140260-8140811,8141390-8141464,8141542-8141598,814...    29   6.4  
06_01_0354 - 2550061-2551033,2551125-2551385,2553079-2553274,255...    28   8.4  

>09_02_0376 +
           8140260-8140811,8141390-8141464,8141542-8141598,
           8142645-8142833
          Length = 290

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 353 HLWSPSQQDRAEATVQYW 406
           H WSP Q  +AE  VQ+W
Sbjct: 238 HFWSPYQNVKAEQKVQWW 255


>06_01_0354 -
           2550061-2551033,2551125-2551385,2553079-2553274,
           2553443-2553632,2553750-2553983
          Length = 617

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 709 APRVMSCFPLPAYHDDED 762
           +PR +  FPLP Y +DED
Sbjct: 160 SPRYLCLFPLPYYREDED 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,496,155
Number of Sequences: 37544
Number of extensions: 424140
Number of successful extensions: 992
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)